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ET13505

CSHL Arabidopsis genetrap mutant lines

Original: ET13505

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13505

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20078724 [Map]; Strand: c
      • AT1G53780.2 - [+] show detail - peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;AT...
        Distance: -976; Region: promoter
      • AT1G53780.3 - [+] show detail - peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;AT...
        Distance: -496; Region: promoter
      • AT1G53785.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: ET13505 - 5-prime edge 
    CTTTCTCCCT GCGTATGGGT TTGCGGCTCC GATCATCCCT GTGACGGAAA 
    TCGAGCGGCG GATCCCGCAG CTGAGGGGTG ATGACGGCTA TCGTCGGAGG 
    TATTTCGTGC TCGCTTTCTC TTTTCGGGAG TTTCAGCGAC GGCGGTTCAT 
    GTGATGGGGT TAGGTCCTGC GGTAAGATAC GGTTCCTCCG GCTTGCGGGA 
    TTGGTGGCTC CAGTCTCGGG TTGTTGGCGG TGGCTGTGCT CGCAACCGTC 
    GAATAAGGGA TAGCCTCGTT GAGAGAATAT CGGTTTTATT TCCGGTTTAA 
    ATCTCATCAA CAAACCATCT CTAAACCGGG TTGTACTTAT GAATTGAAAA 
    CATCACGTAG TTTTATTATC TCTTCTATCT GAAAACAGCA CGCATGTTAT 
    AGCATTTTGA ATGATTTTTT ATAAGGGATT ATTTAGAGGC CTAAGGCGCG 
    TAAAGAAGAG CTAAAAGCGT AACAGAAGAA TCTCTCTCAG TCGCAACAGT 
    TTCCGGTTAC TCCAAGATCG CCGTCGTGCA CCTTCTCTCC TCCTGCTACT 
    CAGGTTCTGA GGTTAGCTCG TAAATCTCAT CGACCATCAC TTCTTCTACT 
    ACTCGTTCCA ATTACCATAG TACGAAGACA TTGCTCGAGA ATCTCTCAGT 
    CGCAACAGAG TCCGACTACT CCAAGATCGC CGCCGTGAA

AT1G53780.2

Model type
Protein coding
Short Description
peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases
Computational Description
peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein folding, protein catabolic process; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), ATPase, AAA+ type, core (InterPro:IPR003593), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: regulatory particle triple-A 1A (TAIR:AT1G53750.1).
Link
InterPro Scan - TAIR

AT1G53780.3

Model type
Protein coding
Short Description
peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases
Computational Description
peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein folding, protein catabolic process; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: regulatory particle triple-A 1A (TAIR:AT1G53750.1).
Link
InterPro Scan - TAIR

AT1G53785.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR