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Mutant Lines
ET13515

ET13515

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

embryo lethal (unconfirmed)

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: ET13515

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 5258044 [Map]; Strand: c
  - AT5G16090.1 - [+] show detail - INVOLVED IN: nucleotide-excision repair; LOCATED IN: nucleus; CONTAINS InterP...
    Distance: -814; Region: promoter
Flanking Genome Sequence: ET13515 - 3-prime edge
```
AATGAAACGG TAGAGTATTT TACCGACCGT TACGACCGTT TTCATCCCTA 
TTTCCGACAG ATCTTTTTTA GACTGTCACA CACACTTTCA TCTCCTTCGC 
CGCTTGTTCA ATTGGGAGAT CAAAAAGCTT ACAAACATCC TTCAGTGTCA 
TATTTTTAGT TCTTTCTCTC T
```

5 prime edge [+] show sequence

Chromosome: 5; Position: 5257989 [Map]; Strand: c
- AT5G16090.1 - [+] show detail - INVOLVED IN: nucleotide-excision repair; LOCATED IN: nucleus; CONTAINS InterP...
  Distance: -759; Region: promoter

CTTTCTCCCT GGTCGGAAAG GAGGCCTTCC TCGGTGGCCT CACCGCAAAG 
TAATTGAATC AAAACACTAT AAACAAGTCT CACTTTCTAA AAGTTTGTTT 
TAGCTTTCTC TGTAGTTTAA CAAATTATCT TTTTAAATTG ATTTGTAGAT 
CAAAAGCCTC CAGGCAAAAA TCGAGGCATT GAAGACTTTG TTACTCACGG 
CAAAGGATGG TGAAGTTAAG GCTCGTACTG AAGCTGAGAT TGAGAGGCTA 
CAACGTCAAA TAGACAAAAT TTGCAGTGAC ATACTCAAAA ATATGTAATT 
TGTTTTTCAT TCAAAATCCA AAGACTTGAT ACACTACGTA GATTTTATCG 
TTTGTTACGT TTTGATACAC AAATAGTTGA ATTATATTTT TTTAGTATAC 
AATTATTGAC GTTTCCAGCA GAACAATAAA ATTCTTGAAA AATTCAAATA 
AAACACATTC ACTCTTCTCT TTTATTTTGT TCTGCTTCTG TTTTCGATCA 
TATTGTTGCA CGAAGCTTGT GGTATAATGG GCTTAGAAAT GAAAATATAG 
GCCCAATAGT GACGCTCGTC AGCCGTCAGG GAAATACGGT TACAAGAATT 
CAGTTAAGAT ATTAACACGT GTCATATTTT AGTTGGATTA TTCACTGTAG 
TTATTGAGGG AC

AT5G16090.1

Model type: Protein coding
Computational Description: INVOLVED IN: nucleotide-excision repair; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), UV excision repair protein Rad23 (InterPro:IPR004806), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family (TAIR:AT3G02540.1); Has 1311 Blast hits to 954 proteins in 240 species: Archae - 0; Bacteria - 0; Metazoa - 634; Fungi - 179; Plants - 321; Viruses - 27; Other Eukaryotes - 150 (source: NCBI BLink).
Link: InterPro Scan - TAIR