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ET13518

CSHL Arabidopsis genetrap mutant lines

Original: ET13518

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET13518

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22395085 [Map]; Strand: w
      • AT3G60580.1 - [+] show detail - C2H2-like zinc finger protein
        Distance: 41; Region: intergenic
      • AT3G60590.3 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -3143; Region: intergenic
    Flanking Genome Sequence: ET13518 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTAGTTAG 
    GCCAACACGA CGTGAGGGCA ATACGAAAAA AAGAATCGGC GTTAGAACAT 
    GTAAAAGTAG CCTCCTTTGC ATTTAAAATA AAACATTATC TTTCTTTTTT 
    TTGTCTAGCT CGACCCCAAA AATAATAATA GTAAAAGAAG AAAAAAAAAG 
    ATTCCAACTT TACGAAAATT TGGACGACCC GAATCACCCA AAGGCTGGTA 
    CCTTTATTCC GCATTCATTG AAACACCACA GAAACTTCGG CTTCTTCGGG 
    GGGGGGGGGG AGATTAAGAT TTATCATCCT CTGGTTCACA GACTCGTTTC 
    TATGAACTCG ACGGTGGTGA TTCACAAAAA AATTCCCTAC CCCGGGGGAA 
    CTTTTGGGAC CTCCAAGGGG TTGGCCCGAT GGGAAAACTC TTAAACAAAT 
    CGGACATTCA TGGGTTCTCT TAGCAACCAC CACCACCTTA TCCTACCCTG 
    GTT

AT3G60580.1

Model type
Protein coding
Short Description
C2H2-like zinc finger protein
Computational Description
C2H2-like zinc finger protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G45120.1); Has 2639 Blast hits to 2349 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 1624; Fungi - 13; Plants - 935; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G60590.3

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR