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ET13521

CSHL Arabidopsis genetrap mutant lines

Original: ET13521

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13521

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3044991 [Map]; Strand: c
      • AT5G09800.1 - [+] show detail - ARM repeat superfamily protein
        Distance: -578; Region: promoter
    Flanking Genome Sequence: ET13521 - 3-prime edge
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACTATAA ACAATTTGTC 
    CAGTTCTCGT AAATAAAATA CTCGTATTGT CCCTTGAAGA ATTGTTGTAG
    TCATTAATAT TTGTAAAACA AATGTGATAA AAGGAAGTGA ACTTATTGAC
    CAGACAGATT CGACGGCCTT TTGCAACTTT TGTTGCTTCC TTTTCCTTTT
    CAAAGTCCAC TTTAAATAAA GTCTTTATCG ATTACCTTAG CGACAAAGTG
    TCAATGACAT CAAGAGTAAA CTACTACTCG GTTATGTGAA TGTGACAGTC
    CAGGCTCGTG TATGGGCCTT GTATGTAACC CAAACCATCG TTCGTAGGCT
    TAGTCATTTA TTATTATTTT GCGAATCAGA GGCCCATTAA ATTTACTCCT
    CTTTTTTCTA TGTCAATACA TAGAGAACAA ATAAAGAAAG AAGGCGAGTT
    ATCGTTATGC TATAACCTCA TCGCACTTTT TATGTTTTTT TGGTATGAGC
    CTCATCGCAT TTGTTATCTT TATGATCGTG TTTATATTAT ATATGTAAAT
    GTAGTGCGAT TGCAATGAAA TAACGTTTTT TTTAGTGAAG AATTGCGCTT
    AAGTTTTTGG CGGAGGGTAA TTGTATTGCA AAAGTCACTA AACTTTAGAG
    AGAAGCATTT AACCTTTCGG ATTACAAAAA AATACTGTGA CAATAAATAA
    AAAAAATCAA TGAGAATGAT
  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3044925 [Map]; Strand: c
      • AT5G09800.1 - [+] show detail - ARM repeat superfamily protein
        Distance: -512; Region: promoter
    Flanking Genome Sequence: ET13521 - 5-prime edge
    TCCTACTTTC TCCCTGGTTT ATAGGCTCTT TAAAAGAAAT CAAAAGGTTC 
    CCGAGTTTCC TCGAACGGTG CAATTTTAAA ATGTAAGTGG ATCCTTAGGC
    GAAATCTGTA CCGTTGGTGG TACTGTTAAC GGTTGAGATG AACTCGAATA
    CAAATCTTAG TCTACGCGCG CCGAAAGATA CCCAGACTCA ACTATTTGAC
    CAAAAGTGAG AGAACGAAAT ACGGAAAAGT ATT

AT5G09800.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, LP.06 six leaves visible, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: CYS, MET, PRO, and GLY protein 2 (TAIR:AT5G64660.1); Has 1911 Blast hits to 1878 proteins in 97 species: Archae - 0; Bacteria - 16; Metazoa - 84; Fungi - 4; Plants - 1697; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).
Link
InterPro Scan - TAIR