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ET13523

CSHL Arabidopsis genetrap mutant lines

Original: ET13523

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET13523

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 12013462 [Map]; Strand: w
      • AT1G33120.1 - [+] show detail - Ribosomal protein L6 family
        Distance: 938; Region: intergenic
      • AT1G33130.1 - [+] show detail - transposable element gene
        Distance: 3189; Region: intergenic
    Flanking Genome Sequence: ET13523 - 3-prime edge 
    TTACCGACCG TTACCGACCG TTTTCATCCC TATTTTCTTT TATGGTTCAT 
    ATTCCTGATC AAGTTCATCC CTGTAGAAAT TGGATGAGCT TAACGGCCAT 
    AACGAAGACG AAGAGAAATT AGAAAATAAA GAATAGTTTG TGTTTGTTTT 
    AGGATGAAAA AAAAAATTGA CTGATTTTAT AGGGTTTATG GCTGATTTTA 
    TAATCCATTA AGGAAAATCT GAGAATGCAA TTAGTTTATG ACTATAAACT 
    CAATAACCCT TTGTTTTATG GGCCGTAAAC TAAATTAGAT TATTTTAGGC 
    AACGAGAAAA GAAAAAAAAA AAATTCTGGC AAATATTAAA TAGTTGAAGT 
    TTATTTTTGG AAATTTTCCC AGCTAAAATT ATAAAAGTTT ATTTGAGTAA 
    CAAATGAAAA AGTTTTGTTA AATATTAAAT TTGAGTATTT GAAAAAGTAT 
    TTGAGTATTA AATTTAAGTT AAAAAAAGTA TGAGTATTAA TTTGACTAAA 
    TATTAATAGG GGGTTATTCG TTTATAATTT CAAAAGAGTT TTAATGATTT 
    AAATTGCCAT GAAAAATCTG TTGTTATTCA ATCAAGACTT TTTTAAAGAA 
    TGTAAAAGTT TTGGGTTATT CGTTTAAGAT TTGTAAAAAG TAATCTAAAA 
    TCTTCATAAA TTTTGG

AT1G33120.1

Model type
Protein coding
Short Description
Ribosomal protein L6 family
Computational Description
Ribosomal protein L6 family; FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: fruit, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6 (InterPro:IPR000702), Ribosomal protein L6, alpha-beta domain (InterPro:IPR020040), Ribosomal protein L6, conserved site-2 (InterPro:IPR002359); BEST Arabidopsis thaliana protein match is: Ribosomal protein L6 family (TAIR:AT1G33140.1); Has 1644 Blast hits to 1643 proteins in 495 species: Archae - 312; Bacteria - 169; Metazoa - 422; Fungi - 179; Plants - 339; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G33130.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (Ptta/En/Spm), has a 1.3e-125 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR