1. Home
  2. Mutant Lines
  3. ET13534

ET13534

CSHL Arabidopsis genetrap mutant lines

Original: ET13534

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13534

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 9810022 [Map]; Strand: c
      • AT5G27700.1 - [+] show detail - Ribosomal protein S21e
        Distance: -1516; Region: intergenic
      • AT5G27705.1 - [+] show detail - transposable element gene
        Distance: -1747; Region: intergenic
    Flanking Genome Sequence: ET13534 - 3-prime edge 
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATTCATT 
    ATCGTATCAC ATCACATAAT TAGGACGAGA CAACAACACA CAACCGTCTA 
    ATAAAGAATA AAAAGACAAT AATAATAATT TATCGCCACA AGAATACTTT 
    ACCAAGTGTC AAATTTGCAA AATTCAAGGC TATAGTTCAA AGTGGTGTCC 
    TTAATTATGT TCATTCTCTC ACTTTGAACA TCGCTTCTCT AATGTACAAA 
    CCAATCAATC TTGGCGCCAT GGATTATAAT GTTTGTTAGT TGACCCTCTT 
    ACATAAATAT TATTGACCCC ACCAAATTTA TATTTAAGTA TATCCCAATT 
    GTTATATTTG ACACTAAAAC ATGTTATCTC ATCACAAATA AATATAAAAC 
    AGAAAAAGGC TCATTAAATT AAGCTAAACC TAATTATCAT TTGTCGATGT 
    TACAAAATTT TTTTTTTTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 9809965 [Map]; Strand: c
      • AT5G27700.1 - [+] show detail - Ribosomal protein S21e
        Distance: -1459; Region: intergenic
      • AT5G27705.1 - [+] show detail - transposable element gene
        Distance: -1804; Region: intergenic
    Flanking Genome Sequence: ET13534 - 5-prime edge 
    CCTACTTTCT CCCTGATAAT GAACGTCAGT TTTCACAATT CCAAGTGAAT 
    GACATATTAG TAGTAACAAA GAGTTGAGAA GAGTTGAGAA GAGTTTGAGC 
    GAGAATGTTG ATAGAACCCT ATATAGGATC CTATCGAGAT AGTTTGCAAG 
    TACTTCGACC GACCAATCTC CTACGTATTT CGTTTATTCA AGAAAACGAC 
    AACTCCACTT TTGATCTTTT AATGGATGAT TTCTATTAAA CTCAAAGGTC 
    TCCTTTAAAT AGGAATCAAC CTTGGTAAAC AATCAAATCA CACTAATATG 
    TAGCAATAAA GAAAAACAAT AAAACTATGG AAGACAATAA TGAAAAGTCT 
    ATGTTCTTAA CTTTCTAACT AAATGGTTGT CTATTAGAAT GACGGATTTA 
    CTTAGAGCGT TAAGAATATG AGAATTTTTA TGGAATTTTC ATCGTTAAAA 
    AGTGAAAAAC CAATAAAACA TAAAAATTTA AAAGCAACTT CAAAATTTAT 
    ATGTTATTGG TTTATGATTT CAAAAGAGTT TTAGTGTCTC AAAGTGCCAC 
    GCAGAATCTG TTGTTATTTA ATCAAGATTT TTTAAAAATA TGTTAATGTT 
    TTGTGTTATT CATTTAAGAT TTGTAAAAAG TAATCTAAAA TTTTCTTAAA 
    TTTGGGGTTA TTAAATTCAT ATATTTTTTT TT

AT5G27700.1

Model type
Protein coding
Short Description
Ribosomal protein S21e
Computational Description
Ribosomal protein S21e ; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, ribosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S21e, conserved site (InterPro:IPR018279), Ribosomal protein S21e (InterPro:IPR001931); BEST Arabidopsis thaliana protein match is: Ribosomal protein S21e (TAIR:AT3G53890.2); Has 660 Blast hits to 660 proteins in 258 species: Archae - 0; Bacteria - 0; Metazoa - 293; Fungi - 137; Plants - 120; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G27705.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 2.2e-58 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR