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ET13536

CSHL Arabidopsis genetrap mutant lines

Original: ET13536

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13536

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4951145 [Map]; Strand: w
      • AT3G14730.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G14735.1 - [+] show detail - U6-1; snRNA
        Distance: -140; Region: promoter
    Flanking Genome Sequence: ET13536 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAGCCACAT 
    TGCAACGCTG TGCACAGCGC AAAGATTACG TTTCCGGCCA ACAGATCCAC 
    GGTTTCATGG TTAGAAAAGG GTTTCTGGAT GATTCGCCAC GCGCCGGCAC 
    GAGCCTCGTT AACATGTACG CTAAGTGTGG TCTCATGCGG CGTGCGGTGT 
    TGGTCTTTGG TGGATCCGAA CGCGATGTAT TTGGTTACAA CGCTTTGATT 
    TCTGGGTTTG TGGTAAATGG GTCTCCTTTG GATGCGATGG AGACGTACAG 
    AGAAATGAGA GCTAATGGGA TTTTACCTGA TAAGTATACA TTTCCTAGTT 
    TGCTAAAAGG AAGCGATGCT ATGGAGCTTT CTGATGTTAA GAAGGTTCAT 
    GGATTGGCGT TTAAACTTGG GTTTGATTCC GATTGTTATG TGGGGAGTGG 
    CTTAGTTACT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4951207 [Map]; Strand: w
      • AT3G14730.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT3G14735.1 - [+] show detail - U6-1; snRNA
        Distance: -78; Region: promoter
    Flanking Genome Sequence: ET13536 - 5-prime edge 
    CTTTCTCCCT GAATGTGGCG ATACATGTAG CAACATTGTG GTGCTCGTAT 
    CTCTTCGGGT TTTCTTCGAT TTGCCCAGAA ACAGTCGAAT ATAAAGATGC 
    TAAAGCAGAA GAAGGCTTTA TAGCTGCGAA TAAATCTGGG TTCCGTGGGA 
    GAAATCTCAA AATTCCGGCA GAACAATTTT GAATCTCGAT CCGTAGAAAC 
    GAGACGGTCA TTGTTTTAGT TCCACCACGA TTATATTTGA AATTTACGTG 
    AGTGTGAGTG AGACTTGCAT AAGAAAATAA AATCTTTAGT TGGGAAAAAA 
    TTCAATAATA TAAATGGGCT TGAGAAGGAA GCGAGGGATA GGCCTTTTTC 
    TAAAATAGGC CCATTTAAGC TATTAACAAT CTTCAAAAGT ACCACATCGC 
    TTAGGTAAAG AAAGCAGCTG AGTTTATATA TGGTTAGAGA CGAAGTAGTG 
    ATTGTCCCTT CGGGGACATC CGATAAAATT GGAACGATAC AGAGAAGATT 
    AGCATGGCCC CTGCGCAAGG ATGACACGCA TAAATCGAGA AATGGTCCAA 
    ATTTTTTTTG GCAAAAATTT TCAGATTTTT TCTTCATCTG TAGATTTCTG 
    GGTTTTTTTT TCCGTTTCGT GAATCATAAG TGAAGTTTTG GATGCAAATC 
    TGCGCGAAAA AAGTTGGACC TGCAATGAGC TTATTT

AT3G14730.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 39287 Blast hits to 13376 proteins in 233 species: Archae - 0; Bacteria - 3; Metazoa - 52; Fungi - 106; Plants - 38683; Viruses - 0; Other Eukaryotes - 443 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G14735.1

Model type
Small nuclear RNA
Short Description
U6-1; snRNA
Computational Description
gi|16516|emb|X52527.1|ATSNU61 Arabidopsis thaliana U6-1 snRNA gene
Link
InterPro Scan - TAIR