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ET13544

CSHL Arabidopsis genetrap mutant lines

Original: ET13544

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13544

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 431814 [Map]; Strand: w
      • AT2G01940.1 - [+] show detail - C2H2-like zinc finger protein
        Distance: -461; Region: promoter
      • AT2G01940.3 - [+] show detail - C2H2-like zinc finger protein
        Distance: -461; Region: promoter
    Flanking Genome Sequence: ET13544 - 3-prime edge 
    AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT AAATAGTTGT 
    ATTGTATCTG CAAATTAGGA GAGAATTTAT GAATATCGAT ACGGTGCTAA 
    CTCTTAGATG ATGTAAGAAG CAATTAAATA ATAAGGTTAA GATACTTCAT 
    TACTTCTAAT TAACTTTTTG ACTGTCACTC TCAAGTCCTA TAAATAGTGT 
    GATTATACAT CACTAATACA TCTTGCGTTT CATTATTGTT AAAGCAATCC 
    AATAATATAT AGACAATTTA AGAAAAATTG TCATTGTTAA CTATATATGA 
    ATGTTATGTC ATCATGTTTC CAACGTTGGT CCACATACAT GTTAAGATTC 
    TTTTCGAATT ACACTTGGAA ACAAGGAGAG AAAAAAAAAG GTATATGGTT 
    CTTGTGAATA ATCCAAGGAT AAAAATGCAT TATTGCATTA AATACCAAAT 
    TCT

AT2G01940.1

Model type
Protein coding
Short Description
C2H2-like zinc finger protein
Curator Summary
May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells.
Computational Description
SHOOT GRAVITROPISM 5 (SGR5); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 14 (TAIR:AT1G68130.1); Has 34856 Blast hits to 17366 proteins in 321 species: Archae - 1; Bacteria - 0; Metazoa - 32828; Fungi - 237; Plants - 754; Viruses - 1; Other Eukaryotes - 1035 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01940.3

Model type
Protein coding
Short Description
C2H2-like zinc finger protein
Curator Summary
May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells.
Computational Description
SHOOT GRAVITROPISM 5 (SGR5); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 14 (TAIR:AT1G68130.1); Has 13187 Blast hits to 8766 proteins in 255 species: Archae - 0; Bacteria - 0; Metazoa - 12025; Fungi - 55; Plants - 746; Viruses - 1; Other Eukaryotes - 360 (source: NCBI BLink).
Link
InterPro Scan - TAIR