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ET13548

CSHL Arabidopsis genetrap mutant lines

Original: ET13548

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET13548

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 172856 [Map]; Strand: c
      • AT2G01390.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13548 - 3-prime edge 
    AAACGGTAGA GGATTTTACC GACCGTTACC GACCGTTTTC ATCCCTACGA 
    AGATGCTTTT CGCTGATGGG AGGGTGGAAG AAGCCACGGA GGTGTATAAG 
    GAGATGTTAC GGTCGCGGGT TTCTCCGAAT TGTCACACTT ATACTGTATT 
    GATGGAGTAT CTTGTCGCCA CAGGTCAACT TCATTCTCTT GCACACTAAG 
    TGTTTGTTAA AATGCTTAGC TGAAAATCCA AAACTTTTGC TTTATGTAGA 
    TGATTCTGGT ATCTGAATGT TTTGTAGCCT TGTTGATGAT GATGTGTTAG 
    TTTCTTCGTT TGATTTTGCA GGAAAATGTG AGGAAGCCTT GGACATATTC 
    TTTAAAATGC AAGAAATTGG TGTGCAGCCA GATAAAGCAG CTTGCAATAT 
    TCTGATAGCG AAAGCCTTGA AATTTGGGGA AACATCTTTC ATGACTCGAG 
    TTCTTGTGTA CATGAAAGAA AATGGAGTTG TCCTACCGCT ATCCTATCTT 
    TGTTGAAGCT TTAGAGACAC TGAAAGCTGC AGGCGAAAGT GATGATCTGT 
    TAAGGG

AT2G01390.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G01360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR