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ET13553

CSHL Arabidopsis genetrap mutant lines

Original: ET13553

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET13553

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 8864885 [Map]; Strand: w
      • AT5G25460.1 - [+] show detail - Protein of unknown function, DUF642
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: ET13553 - 3-prime edge 
    TCCTACTTTC TCCCTGAGCC GGGTAATACT AATGGACCTT CTTCAAATCC 
    TCCGTTTTTC AAAATGTTCT CTGCCAAATC AAACATAAAA GAAAATCATC 
    ATTATTCACA TGTTCAAGGA TTATAAAAAC AGAGCAAGAA ACAGAGTATT 
    TATAGTAATG ACTTACTATT AGTTGGTCTA GGAGGGTAAA GAGATCTCAT 
    AGCAACACCA TCAATAAGTG GACCACAAGC TGGATCTTCC TCAACACCAG 
    GATTATGAAT CACAACTTCA GCAACATCAC TCTCAGCTTG AAACGCCCAA 
    GCATATAAAT CCCAACCACT ACTACTATAA ACCGTCTGAA TCGGAATCAC 
    ACCGGAGTCA GGTGCTACAG ATATGTTAAG TCTCTCGTCT TGTGCACAAG 
    TTCTAGCAGC ACTAAAAGTG AGTGAGTAAT ACATTCCTTT AACCACTTTA 
    AGTCTTTGTT TGATCGATGC TTCGTTCCCA AGTCTTACAG CGAATTTACC 
    GGCGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8347413 [Map]; Strand: w
      • AT1G23540.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 0; Region: exon7 (CDS)
    Flanking Genome Sequence: ET13553 - 5-prime edge 
    CTTTATCCCT GATGCTCCAA TAACGCTTTT CAAGCCGTGT ATCAATCAGT 
    TCGCTTAAAT CTCCGGTCTC AATGGCTTTG AGAAGCAGCG GGCGCGCCTG 
    TGAGTTCATT TATAAGTACT ATATAAGTAT ACTAGGGCCA ATCTTACTAT 
    TATTGAAGAA TGTTTGAAAG TTGGATTCTT ACCCATTCAA CCAAACTCTC 
    TTCTCCTAGA GGCTGAGTCT GGTCAACTGG TTTCCGTCCA GTTACAAGCT 
    CTAAGAGAAC AACCCCGAAT GAGAATACAT CGGATCTATC AGTCAATTTT 
    CCACTTGATG CATATTCCGG CGCTAGGTAC CTTAACACAA AACATGTCAT 
    GCAGCCATAG GATCAATAAA GATTCAGGTT TGATCCAATT TGTTGCCTAA 
    AGCCATATAT AACAAACTTT TCATCAGGCA TTGGATCAAT AAGGTCCAGT 
    TTTGGAGTAG AGTTTGTGAT GAATGTTTGC TTACCCGAAG GTTCCCATAA 
    CCCGAGTTGA AACATGAGTT TGTGTTGTAT CATTGAGTCT AGCAAGTCCA 
    AAATCAGCAA CCTAAACATC CAAAAAACAG AACAAGTCTC ATTAACTAAA 
    AACTTTACAG TCATAAGATG GATTTAACGA AAAGGAGGAT TTCATTATTG 
    CCTGAGCTTC ATATTCATCA TCTAGAAGAA TATTTGCTGA CTTTATATCT 
    CTGTGAATGA TTTTCGGATG ACCTGTAAAA TAAACAAGGA TATGATTCTG 
    GCTTCTGTTT AACTATG

AT1G23540.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Curator Summary
Encodes a member of the PERK family of putative receptor kinases. Overexpression leads to morphological defects and reduced fertility and increased expression of MAX genes.
Computational Description
INFLORESCENCE GROWTH INHIBITOR 1 (IGI1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: developmental process; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, flower, anther, root, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: root hair specific 10 (TAIR:AT1G70460.1); Has 385447 Blast hits to 227080 proteins in 6289 species: Archae - 678; Bacteria - 66210; Metazoa - 145576; Fungi - 56663; Plants - 56890; Viruses - 7200; Other Eukaryotes - 52230 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G25460.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF642
Computational Description
Protein of unknown function, DUF642; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF642 (TAIR:AT5G11420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR