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ET13554

CSHL Arabidopsis genetrap mutant lines

Original: ET13554

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13554

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 14754692 [Map]; Strand: c
      • AT3G42660.1 - [+] show detail - transducin family protein / WD-40 repeat family protein
        Distance: 0; Region: intron9 (CDS)
    Flanking Genome Sequence: ET13554 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACTCCAA AGGTCTTAAC 
    TACCAAAATA TATGTGAAAT AGTCTTAAGT TTGTTTTGGG TAAGCAACAG 
    AGATGAATAT ATACCAGGAG ATTTCGTGTT CTTGCTATAA GTAACAAAAT 
    ATGCTGAAAC TAGTATCAAT ATCGATATAT GAGACCATTT CCAATATATT 
    ATTTCCTCCT AATCTCAGAC TCAACGAATA GTGGACGATA TGGCTTTGGT 
    CGGGGGAGAC ACAACAGCAC TTGAAGATGA ACCTTTTGAC CTGGAAGTTT 
    CTCAAGATAA ATGCATACTA AGGCTCATCA GCTCGTGTTG TAGTAGTAAG 
    TTAAATATAT ATCTGCTTGT GTTGTGTGTG AACTCATATT CTAAGACCAG 
    TACTGTCCAG ATTTTTACAA CAAGATTCTT TACATCTTTC AGGTGATAGT 
    TTTGCAAGGG CCAGTGAACT TATGGAGCTT TTAACTCTAG AAAAATCAAT 
    GAGAGCTGCA ATAACACTGG TTACCAAACT CAAGCTTCCT TTTTTGGCAG 
    AGAAATTCAG CAGCATACTC GAGGTACTCT ACAAGTACTT TCATTTCTTA 
    TATTTTTGCA CAAAGAGAAG AAAAATTAGA TCCAGACGTA ATGCTAATTT 
    TTTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 14754626 [Map]; Strand: c
      • AT3G42660.1 - [+] show detail - transducin family protein / WD-40 repeat family protein
        Distance: 0; Region: intron9 (CDS)
    Flanking Genome Sequence: ET13554 - 5-prime edge 
    CCTACTTTCT CTCTGTCTTA GAAGACACAA TATACTGCTT AACAAAACTT 
    GACCAGAAAA GGAGAAATAA CAGCAAATTA AAATGGTGTA ATAAGGAGAG 
    AGAAAAACCT CGTATAAACG CAGCTGCTTT AGTATTAACT CATTTTCTAG 
    AGATGCTGCT CCTAAATCTG AGGATGCAAG CGGGAGAGAA AGGTCTAGTA 
    TGGTAAGGAT TGGTTTTGGT GTCACCTGAA ATGGCAGGAA GAATAGTGGT 
    GAGCCAATAT TTTCCAGATA AGTAAACACC TTAATATCAA GAGTGATAAT 
    ATATACCTGT GGGAACATCT CCGCGTATTT GCAAGCTATA CAGTACAAAC 
    TGCTTGTATT CAAGCCAACC ACCCAGTAGT TTTCTTCTTG TTTCTTCTCT 
    TTACTGGTAC TGAAAATTAC AATGAATTCA GTGAGTAAAA ACACCTTGAA 
    GAAAGATGCG TAAAGAAAGT TCTCGGAAAG TGTCAATAGC TACGGCAAGA 
    TACCTGAAAA CTGGGATCCA TGAGCCACCA TATTGACTTG TAAAAACCCT 
    CAACACACCC TGCAGGAAAC CTTTCTGTTG TAATGCGTGT TGTATGCAAA 
    GAGCACCAGT GTAATAGCAA AATGAGTGAT CGTAAATGCA AGACAGCACA 
    CCTCAGAATC ATATGAGCTC AAAGAACCTT CTTCACTGAA TCCTATCCAT 
    GTTAAACGTG AGCCAGGG

AT3G42660.1

Model type
Protein coding
Short Description
transducin family protein / WD-40 repeat family protein
Computational Description
transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), Protein of unknown function DUF3639 (InterPro:IPR022100), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G23430.1); Has 41589 Blast hits to 20655 proteins in 706 species: Archae - 66; Bacteria - 8583; Metazoa - 14223; Fungi - 8894; Plants - 4578; Viruses - 3; Other Eukaryotes - 5242 (source: NCBI BLink).
Link
InterPro Scan - TAIR