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ET13560

CSHL Arabidopsis genetrap mutant lines

Original: ET13560

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET13560

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1975677 [Map]; Strand: w
      • AT3G06440.1 - [+] show detail - Galactosyltransferase family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT3G06440.2 - [+] show detail - Galactosyltransferase family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: ET13560 - 3-prime edge 
    ACCGACCGTT TTCATCCCTA TCTGAAACTG CATTTGGCTG ATCTTGGATC 
    TTCATGAATT ATGTACTTGA AAGATCAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 7016605 [Map]; Strand: c
      • AT4G11610.1 - [+] show detail - C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET13560 - 3-prime edge 
    GACCGTTTTA TCCCTACTAC GAGCTTTGAC AACGCGGACA TAAAGGAAAT 
    ACTTCTCTCG ACAAGATCAT AAGTACTCGT AGCGGTTTTG TCTTTGTGTA 
    TAACACGCCC ACCAACGACT CTTCCACCAC CGAGATGCGG GCTTGTCTCC 
    TTAAGCGCGA AATCAGCAGG CCTGAGCCCG AACAATGGAA TGCGCATGGA 
    CTAGCT

AT3G06440.1

Model type
Protein coding
Short Description
Galactosyltransferase family protein
Computational Description
Galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galectin, carbohydrate recognition domain (InterPro:IPR001079), Glycosyl transferase, family 31 (InterPro:IPR002659), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320); BEST Arabidopsis thaliana protein match is: galactosyltransferase1 (TAIR:AT1G26810.1); Has 2377 Blast hits to 2343 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 1703; Fungi - 5; Plants - 611; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06440.2

Model type
Protein coding
Short Description
Galactosyltransferase family protein
Computational Description
Galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galectin, carbohydrate recognition domain (InterPro:IPR001079), Glycosyl transferase, family 31 (InterPro:IPR002659), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: galactosyltransferase1 (TAIR:AT1G26810.1); Has 2239 Blast hits to 2201 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 1648; Fungi - 5; Plants - 523; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G11610.1

Model type
Protein coding
Short Description
C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
Computational Description
C2 calcium/lipid-binding plant phosphoribosyltransferase family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (TAIR:AT3G57880.1); Has 4911 Blast hits to 3458 proteins in 253 species: Archae - 0; Bacteria - 0; Metazoa - 2965; Fungi - 226; Plants - 1362; Viruses - 0; Other Eukaryotes - 358 (source: NCBI BLink).
Link
InterPro Scan - TAIR