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ET13567

CSHL Arabidopsis genetrap mutant lines

Original: ET13567

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13567

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 10603237 [Map]; Strand: w
      • AT3G28345.1 - [+] show detail - ABC transporter family protein
        Distance: -4462; Region: intergenic
      • AT3G28350.1 - [+] show detail - similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28370.1); similar...
        Distance: -5122; Region: intergenic
    Flanking Genome Sequence: ET13567 - 5-prime edge 
    CTTTATCCCT GTGTGCCGTT GATATAGTTC GGCGAGGAAG ATAATCACAA 
    AACCACGTGA TTATGTATTC TTACTTGAGA TAAAAGAAAT TAGTAATTTT 
    GTTTCTTATT CTTTCTTCAT CGAACAACAT TGATGACATA CTGTATTAAT 
    GAACACCTCC GATGAGTACT TATGGTGGAG GTGATGAAAC TACTCCAACG 
    ATGCTGTAGA GATGATGAAG ACGAATCCGA CGTGATAAGA TGCTGATCTG 
    GCGGTGACGA ATTCAATCCA ATTTTTAGTA ACACAAGTTT TTTCATGCAC 
    AAAAAGTTTG AAGAGCGACC AAGACTTGTC TTTTATTGAT GGAGATACAA 
    CTACGATGAT GTATTTTTCA TTTTGTTCTA CACTAACTAC AAACATGATG 
    GTGACTACTT TAACACCACA ACCGGATATA AACGTCGATT TGAACCCTTA 
    CGATCAAGTA TAAACATCGA TTTAAACTAT ACGATTTGGT ATAAATGTCG 
    ATGAACTAAC CGCTAGGTTT TATAGCCGAT TTGACCCCAC GACCGGGTAT 
    AAAAGTTGAT GACTCGACAG CCGGGTATAA AACCGCTATT ATAAAGGCAT 
    GTCCAATTTC ACATGTGTTA CCACATATGA GCTTGCCGGA AGTATTGGAA 
    AACATG

AT3G28345.1

Model type
Protein coding
Short Description
ABC transporter family protein
Computational Description
ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: shoot apex, inflorescence meristem, cotyledon, hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 17 (TAIR:AT3G28380.1); Has 822177 Blast hits to 385706 proteins in 4160 species: Archae - 14477; Bacteria - 641696; Metazoa - 17642; Fungi - 12086; Plants - 9535; Viruses - 48; Other Eukaryotes - 126693 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G28350.1

Model type
Pseudogene
Curator Summary
Pseudogene of AT3G28350; unknown protein
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28370.1); similar to hypothetical protein OsI_021564 [Oryza sativa (indica cultivar-group)] (GB:EAZ00332.1)
Link
InterPro Scan - TAIR