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ET13571

CSHL Arabidopsis genetrap mutant lines

Original: ET13571

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13571

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 233819 [Map]; Strand: c
      • AT4G00530.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -174; Region: promoter
    Flanking Genome Sequence: ET13571 - 3-prime edge
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTATTTGTAA 
    CTATCCGAGT AAAACCGCTT CGTGCCTGAT ACTGATTTAA AGTATCCGGC
    CCATTTCTAT CAATTTTCCT CTTTAGTTTG GGCCCATCTA AAAGCACCTG
    AAAGGCTGAA ACTGCTTGCC GTTTTTTAAT ATTCAATACT GAGACTGATT
    TAAAGTATCC GCTATCAATT TTCCTCTTTA GTTTAGGCCC ATCTAAAAGC
    ACCTGAAACT GCTTGCCGTT TTAATCTTCA ATACTGAGAC TGCATTACGT
    TTTTTTTTCT AGCCCATTAC GTGTCACGGT GTGCGTATCT TTTGATAATG
    TCTCAATCAA AACCTTTGGA TTATCTTTTG AACGTAAACA CACAACATCT
    TTTTAACATA AACGTTAACC GCAACAATTT TGTGATATCA ACACTGGTTG
    ATTTTACCAA AAAAAAAAAT TTTTTTATTT GGGAAACCCT TTTTTATAAA
    AAAAGTTGTG GGTTGGAATC AAAACACCTA GTTTTAAAAT TGGGGGGTTC
    CCCCCCTAAA AAATATTTTA CCACCAGGCC CAAAAACCTA AAGGAAAATC
    CAATTTTCCG GAAAAAAATT TTTTTTAATG GAAAAAATAA GCAAATTGAA
    AAAA
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1092135 [Map]; Strand: c
      • AT4G02482.1 - [+] show detail - chloroplast outer envelope GTP-binding protein, putative
        Distance: 0; Region: intron1 (CDS)
      • AT4G02485.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: -546; Region: promoter
    Flanking Genome Sequence: ET13571 - 5-prime edge
    CTTTCTCCCT GGTGGTGCCT ACATTTCCCA CGAGGACGAC TCATTTTCCG 
    AGTGCGATCT GTTTCTCGAG TTTGAGACCA CTGGGAATTT TCTCACCAAA
    GAATGTCACT AACCCTCCAA GAGTCAGCTC GTTCCTTCTT GAGTTACATA
    AGTTGCTCAC TTCCCTGGAT ATGAAGCCCT GCCATGGTAG AACCATTGTC
    CCCATTCTAA TTTGGAAGAT TTATGAATTG ATGATTAAAA ATACAAAATT
    TACGATTTTA TATAGAGAAT ATTACACTCG ACACTTTATT AAAATTATTT
    CCGTGTTTAG GCACTTTCAA AAGATTAGGC ATTTTCTCTA TGTTTTTTTA
    CTAAAATACC CTCTTAACTA AAATATTCTC TTAACCCACG TTTTCTCTCT
    TTCTCTCTCT

AT4G00530.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G01725.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02482.1

Model type
Protein coding
Short Description
chloroplast outer envelope GTP-binding protein, putative
Computational Description
chloroplast outer envelope GTP-binding protein, putative; BEST Arabidopsis thaliana protein match is: translocon at the outer envelope membrane of chloroplasts 159 (TAIR:AT4G02510.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02485.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G31600.2); Has 487 Blast hits to 486 proteins in 165 species: Archae - 0; Bacteria - 93; Metazoa - 167; Fungi - 38; Plants - 88; Viruses - 3; Other Eukaryotes - 98 (source: NCBI BLink).
Link
InterPro Scan - TAIR