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ET13573

CSHL Arabidopsis genetrap mutant lines

Original: ET13573

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13573

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30378739 [Map]; Strand: w
      • AT1G80831.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 2258; Region: intergenic
      • AT1G80840.1 - [+] show detail - WRKY DNA-binding protein 40
        Distance: -4952; Region: intergenic
    Flanking Genome Sequence: ET13573 - 3-prime edge 
    AAATGAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    CTACTAACAA ACGAGATTGT TTTTTCTTTT TGTTATCTAG TTCTCTTGGT 
    TTCCAACTAA ATAATACAGG TGATGGGTCT AAATACTAAA ACTTAATAAC 
    GATGTTCAAA AGCTATCGCA TATCTAGTGC ACTGTCAAGC TCAGCCAATC 
    AATTATGGCT CATTTCACAT TAACACAATT CAATTCAACT AAGCCCAATT 
    AGCTTAAATA AAAAAATTGG CCCAACACGG ACTTGCATCG GATTACACCC 
    CACCATTAAG CATTAAACTT TTAAGAATGA T

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30378791 [Map]; Strand: w
      • AT1G80831.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 2310; Region: intergenic
      • AT1G80840.1 - [+] show detail - WRKY DNA-binding protein 40
        Distance: -4900; Region: intergenic
    Flanking Genome Sequence: ET13573 - 5-prime edge 
    CTTTCTCCCT GTTTGTTAGT CATATGTTTT TTTCTTCTTA ACTACTGAAT 
    ATGAAATAGT TGATAATCTT ATCACAGTTT TGTGAGACGT GTATAGAGAT 
    ACAATAATTG TAAAGGATAG GAGTTTCACG TGTGAATATA TGCTACTTTT 
    TTCAAGTGTG CAAGCCTAAG GCTAAAGGGT AAGAATGAAA TACATGTTCA 
    TAATTTTGAT CGGGGAAGAC AACTGGCCGA AAGAATATAC TTACATGTTT 
    GGATTTTTTA CCATTCATAT GCAATTATAC GAGTTTTTGT AGGTTTAGAT 
    CCAAGGGACC ATGCTATAAC AATGCAATGG GATCATACAA TTTTCTTTTC 
    TTTCATGTAA GTTCAGTCTC CAAGCACGTG GAAGTAATAT ATTCGTCAAA 
    GTTTAGACTT CAATTACATC ATGTGGAAGG AAAAAAAATT GATAGGAATA 
    GTAGTATGAA ACTACGTGTA ATATTTTATT AGATACACGT TCGTGCGCTG 
    AGTTATCTAA TGAATTCATC AGGCGAATAA TTCTTGGACA GTCCTTTTTG 
    TTTTGGTCGG CCATCTAGCA AGACTAGTAG TAGACTACCA TAAAGAAAAC 
    AAAACTATTT CAACAAAACA AAACAGACAA GTGACAAAAA A

AT1G80831.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80840.1

Model type
Protein coding
Short Description
WRKY DNA-binding protein 40
Curator Summary
Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.
Computational Description
WRKY DNA-binding protein 40 (WRKY40); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 18 (TAIR:AT4G31800.2); Has 3306 Blast hits to 2859 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3292; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR