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ET13579

CSHL Arabidopsis genetrap mutant lines

Original: ET13579

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13579

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20795256 [Map]; Strand: c
      • AT5G51170.1 - [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family U...
        Distance: 0; Region: exon1 (CDS)
      • AT5G51170.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
      • AT5G51174.1 - [+] show detail - SNOR30; snoRNA
        Distance: -680; Region: promoter
    Flanking Genome Sequence: ET13579 - 5-prime edge
    TCCTACTTTC TCCCTGCCTA CGGCGACTCT TCATCGGATT CCGATACCGA 
    TGATCTTTCT CCGGCGAGTC CCGTTACTGC AAATTCTGGA GAGAAAGATT
    CGATTTCCTT GCCTCCTCCA CCGCTTGCGC TTCTCGATTC CATTGTATCC
    ACAGGTGAAG ATGCTCATCA ATTGTCTCTG TGATTGTTCA TCAATCAAAT
    TCTTAGAGAT TTCACTCATC ACTTATTTTT TATTTCGTCT GAACTTGAAG
    GTTCACTGGA TTTCTTCTCA ACAGAGCCTG GAGTTCGTGT AAGAAACTTT
    CCTCATGTCG ATGGAAATTA CGCTTTGCAC GTTTACGTAC CTGGTATTT

AT5G51170.1

Model type
Protein coding
Computational Description
unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0406 (InterPro:IPR019146); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G51170.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0406 (InterPro:IPR019146); Has 166 Blast hits to 166 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 19; Plants - 35; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G51174.1

Model type
Small nucleolar RNA
Short Description
SNOR30; snoRNA
Curator Summary
Encodes a C/D box snoRNA (snoR30). Gb: AJ505639
Link
InterPro Scan - TAIR