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ET13580

CSHL Arabidopsis genetrap mutant lines

Original: ET13580

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13580

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27202794 [Map]; Strand: w
      • AT1G72270.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR0...
        Distance: 0; Region: exon8 (CDS)
    Flanking Genome Sequence: ET13580 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAATT 
    TTCCTTATGG GCGAACTGCA GAGGCGTCAG ATAACACTTA CATATATGAT 
    GATCCAATAA GCGAGGTACC CTTGTCTTTC ATTTTAATTT TCAGTTAAAA 
    GTTCCGTGTA CTTGCATTTT CAAACTAATC CCTCCTCCTT GTATAGAAAT 
    GCTCACCTGC TATTGAACGA TATGATCCGG TTTTCATCCT GCGATTCTCA 
    GTACAATTAT TGTCCATGGG ATACATTGAA CCTGTGGAGT TCTCCAGTTT 
    AGGCTTGCTT GCAGTGGCAT TTGCGAGCAT GTCTTCAGCA GATTTTGGGA 
    TCAGAAAACT GGGCTACGAA ACTCTAGGGA TATTTGTGGA TGTCCTTGAG 
    GTGATAGTTA TTTTATGTTT TAATGTATCT CTATGACGGG TCTGTCTTTG 
    NAAAAGGCTC ATTGGTCAAA TTTGCTTCTG AGGAAACGGG TTAGAATTTA 
    TTTGTTTAAC TAAAACTTTT TGATGTAGAG TTGTAGGAAG AATATGCATG 
    TAAAGGTACT TAGGCTTCTG CTGACGTATG TGCAAAATGG AGTTGAGGAA 
    CAATGGCAAA GAATCCCAAC TGTGTCTGCT GTTTTTTCCG CT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12164917 [Map]; Strand: w
      • AT4G23250.1 - [+] show detail - kinases;protein kinases
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: ET13580 - 5-prime edge 
    CCTACTTTCT CCCTGCAATA TGTGACTAAA TTGTTAACTA AGCCATCCAT 
    CTGATAGAAG CTGCTATTCT TTTTGCCACT AATGATCTCA AGAATCAATA 
    CTCCAAAACT ATAGACGTCT GATTTCATTG AGAATTGGCC ATGTGTCACA 
    TACTCAGGAG ACATGTAACC ACTGCAAAAA CACAAGTTAA TTTGACGTGA 
    AAGGGTTTAT TGATTGAACT TCATCAGGTC CATATAATAT ATACACTTAC 
    AAGGTTCCAA CTACTCTTGC GGTATTGGCT ACAGTTTGGT CCACTCCAAA 
    GATCCTTGCC ATTCCGAAAT CAGCAATTTT CGGGTTCATA TTCACTCTAC 
    AAGAGAATGT TACTCGCTTT GAGGTCACGA TGTATGATTT TGAGCCGTGA 
    ATCTTGATGA AGATATAGAA TTCCTCGAGT AATCCCACCG ATGATGTTGC 
    GTCTCACTGT CCAGTCCAAC TGATTTCTCT TGTTAGGGTC TGCATGTTCA 
    TACATAATCA GTTAATCAGA ATCAGCTATG TACAAAAACA AGAAACATTA 
    CAAAAAAGTA TATTTCAAGT TAGAAACAAA CCGACCAAAA AGGAAATAAT 
    CGAGACTTTT GC

AT1G72270.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27010.1); Has 772 Blast hits to 657 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 94; Plants - 322; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G23250.1

Model type
Protein coding
Short Description
kinases;protein kinases
Computational Description
EMBRYO DEFECTIVE 1290 (EMB1290); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: protein amino acid autophosphorylation, embryo development ending in seed dormancy; LOCATED IN: plasma membrane; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 18 (TAIR:AT4G23260.1); Has 121653 Blast hits to 119053 proteins in 4422 species: Archae - 98; Bacteria - 13672; Metazoa - 43987; Fungi - 10320; Plants - 35330; Viruses - 426; Other Eukaryotes - 17820 (source: NCBI BLink).
Link
InterPro Scan - TAIR