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ET13583

CSHL Arabidopsis genetrap mutant lines

Original: ET13583

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13583

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27202790 [Map]; Strand: w
      • AT1G72270.1 - [+] show detail - CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR0...
        Distance: 0; Region: exon8 (CDS)
    Flanking Genome Sequence: ET13583 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAATTTTCC 
    TTATGGGCGA ACTGCAGAGG CATCAGATAA CACTTACATA TATGATGATC 
    CAATAAGCGA GGTACCCTTG TCTTTCATTT TAATTTTCAG TTAAAAGTTC 
    CGTGTACTTG CATTTTCAAA CTAATCCCTC CTCCTTGTAT AGAAATGCTC 
    ACCTGCTATT GAACGATATG ATCCGGGTTT CATCCTGCGA TTCTCAGTAC 
    AATTATTGTC CATGGGATAC ATTGAACCTG TGGAGTTCTC CAGTTTAGGC 
    TTGCTTGCAG TGGCATTTGC GAGCATGTCT TCAGCAGATT TTGGGATCAG 
    AAAACTGGGC TACGAAACTC TAGGGATATT TGTGGATGTC CTTGAGGTGA 
    TAGTTATTTT ATGTTTTAAT GTATCTCTAT GACGGGTCTG TCTTTGCAAA 
    GGCTCATTGG TCAAATTTGC TTCTGAGGAA ACGGGTTAGA ATTTATTTGT 
    TTAACTAAAA CTTTTTGATG TAGAGTTGTA GGAAGAATAT GCATGTAAAG 
    GTACTTAGGC TTCTGCTGAC GTATGTGCAA AATGGAGTTG AGGAACAAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26854716 [Map]; Strand: w
      • AT5G67300.1 - [+] show detail - myb domain protein r1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13583 - 5-prime edge 
    GATTCCCCTG CCATCTATTT ATAAAACATC CAGCGAGATC TAGTCTCCTC 
    TATGTTGCTC GATGTCACTC GACAACGAGG AGTCAAACCG TAGCCACGAG 
    TCAACGAATA TCAACAACAC CACTTCGAGC CGCCACAACC ACAACAATAC 
    GGTGTCGTTT ATGCCGTTTA GTGGTGGGTT TAGAGGTGCG ATTGAGGAAA 
    TGGGGAAGTC TTTTCCCGGT AACGGAGGCG AGTTTATGGC GGTGGTGCAA 
    GAGATGATTA AGGCGGAAGT GAGGAGTTAC ATGACGGAGA TGCAACGGAA 
    CAATGGTGGC GGATTCGTCG GAGGATTCAT TGATAATGGC ATGATTCCGA 
    TGAGTCAAAT TGGAGTTGGG AGAATCGAGT AGACAAAGTG AGATTATTAG 
    GAAACTGTTT AAATTGGAGA AGAAGAAAAA TGCTCTGTTT TTTTCTCCTT 
    TGGATTAAGC TTAAGAATTT TGGGTTTTAA CGAAATGTAT AGAGGAAATC 
    GAGTGA

AT1G72270.1

Model type
Protein coding
Computational Description
CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27010.1); Has 772 Blast hits to 657 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 94; Plants - 322; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G67300.1

Model type
Protein coding
Short Description
myb domain protein r1
Curator Summary
Member of the R2R3 factor MYB gene family involved in mediating plant responses to a variety of abiotic stimiuli.
Computational Description
myb domain protein r1 (MYBR1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 77 (TAIR:AT3G50060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR