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ET13587

CSHL Arabidopsis genetrap mutant lines

Original: ET13587

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13587

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5525703 [Map]; Strand: w
      • AT3G16290.1 - [+] show detail - AAA-type ATPase family protein
        Distance: -708; Region: promoter
      • AT3G16300.1 - [+] show detail - Uncharacterised protein family (UPF0497)
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET13587 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGTTGCA GATCAGATAA 
    TAGGATATGC AATGGTGAGT GGAGGATCTG CAGCTTTAGG AGTGACGAAT 
    ATGAACAGAA CAGGAATCAG ACACATGCCT CTTCCTAATT TCTGCAAATC 
    TCTTGGTTTC TTCTGTGACC ATCTCGCTGG CTCCATCGTC TTCGCCTTAT 
    TCGCGTTTCT CCTCCTCGCC GCTTCATCTC ACTCGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22901115 [Map]; Strand: w
      • AT1G61950.1 - [+] show detail - calcium-dependent protein kinase 19
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: ET13587 - 5-prime edge 
    CCTACTTTCT CCCGCCTGTT TTGTCGCGGA TGAAGCAACT CCGAGCTATG 
    AATAAGCTTA AGAAGCTTGC ATTGAAAGTA AGTATCTTTG ATGTTTCGTT 
    TTACTTGATG AAATTAGACC GGTTTCGATT CATTAATATG ATTTGGTTTG 
    GTTTAAGTTT ATCGCGCAAA ATCTCAAAGA AGAGGAACTA AAGGGTCTCA 
    AGACAATGTT CGCAAACATG GATACCGATA AGAGCGGTAC AATCACTTAC 
    GACGAATTGA AATCCGGACT GGAAAAACTC GGTTCGAGGT TAACCGAAAC 
    CGAAGTTAAG CAGCTCTTGG AAGATGTAAG GCGTTTTGTT CTCTTTACTA 
    ACTTAAACTA ACCGGTTTTG ATCAATTTGG TTAATGTTTT TTGGTTTAGG 
    CTGATGTCGA TGGGAACGGT ACTATTGATT ACATT

AT1G61950.1

Model type
Protein coding
Short Description
calcium-dependent protein kinase 19
Curator Summary
member of Calcium Dependent Protein Kinase
Computational Description
calcium-dependent protein kinase 19 (CPK19); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 21 (TAIR:AT4G04720.1); Has 133224 Blast hits to 125450 proteins in 3926 species: Archae - 174; Bacteria - 14115; Metazoa - 49308; Fungi - 18158; Plants - 27356; Viruses - 479; Other Eukaryotes - 23634 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G16290.1

Model type
Protein coding
Short Description
AAA-type ATPase family protein
Computational Description
embryo defective 2083 (EMB2083); FUNCTIONS IN: in 8 functions; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Peptidase M41 (InterPro:IPR000642), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: FTSH protease 1 (TAIR:AT1G50250.1); Has 40436 Blast hits to 36159 proteins in 3226 species: Archae - 1511; Bacteria - 13353; Metazoa - 6817; Fungi - 4228; Plants - 3474; Viruses - 31; Other Eukaryotes - 11022 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G16300.1

Model type
Protein coding
Short Description
Uncharacterised protein family (UPF0497)
Computational Description
Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT1G79780.1); Has 429 Blast hits to 429 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 429; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR