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ET13590

CSHL Arabidopsis genetrap mutant lines

Original: ET13590

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13590

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17703395 [Map]; Strand: c
      • AT4G37682.1 - [+] show detail - Protein of unknown function (DUF1399)
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: ET13590 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAATGGAGA 
    CGACACAACT TGGAAGAGAA ATCAACTCGA AATAGCCAAG AGAATGTTCG 
    TAAACCCCCT CAAATCCGAT GCTTGCTTTG ATTCCAACCT CCAAAAGCCC 
    ATCTGCTCAA ACGAGGAGTA TTACAAGGTA CCTCTATAGA ACAAGTATTC 
    ACTTCCATTC CCTTACTTGT GTTAGTTCAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17820751 [Map]; Strand: w
      • AT4G37895.1 - [+] show detail - other RNA
        Distance: 5573; Region: intergenic
      • AT4G37900.1 - [+] show detail - Protein of unknown function (duplicated DUF1399)
        Distance: 986; Region: intergenic
    Flanking Genome Sequence: ET13590 - 5-prime edge 
    CTTTCTCCCT GGTCTCCATT TTTGTGGCCG ACCTTTTTGT TTTCACAGCG 
    ATGGGTTTAC ATTGGTTTTG AAATTCAAAT TGATCTTGGT TCGGTTTACT 
    TTGGTTTAGA GAAGAAAAAA ATAAAAAATA AGACACGCGA CGGGTTTTTG 
    AGAATGAGGT GCGTGGATCA AAAAAAGAAT GATTTTTGTG GATTAACCCC 
    TTTAGAAATC GTAGACACGC GCTCAACGCG ACATGGGTGA GAGTGGCCGT 
    AAAATCGAGC GATTGGTAAA AGTGGAGTAT GAAGTGGAGC TCTCTCATTG 
    GCTAAAAAAT AAAAAATAGT AGACATATAG CTCCTATCCT CCTCCTCTCC 
    TGCTGAGAAT GAACTTCAAA TTTTATTCAA TCTGAAAGTT GTGTGTGTTT 
    TAGATACAAT TGAAAAAAAC TTGAATATGG ACTTTGTGAT ACTAAAAAAT 
    TTCCTCATCA TTTTGTTCTG CAACCATATT TACAGGTTGG AGCTTATAAC 
    TGAAAACTTG ATTCAAAGAA TCAAACTAAG TGAGTTGAAT ATTTTCTAAA 
    CATGTGAAAT ATATTGGTAC AAGTTTGTCC AATCATTTTG CTATTTTCCT 
    ATTTTAATGT TTTCTCCACT TTAGGAGATG GACTTTCAAG TGCAAGGGAA 
    GGATTTCAGA CCAAGAAACT TTAACTCATT GAT

AT4G37682.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1399)
Computational Description
Protein of unknown function (DUF1399); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1399 (InterPro:IPR009836); BEST Arabidopsis thaliana protein match is: Protein of unknown function (duplicated DUF1399) (TAIR:AT4G37900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G37895.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT4G37890
Link
InterPro Scan - TAIR

AT4G37900.1

Model type
Protein coding
Short Description
Protein of unknown function (duplicated DUF1399)
Computational Description
Protein of unknown function (duplicated DUF1399); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1399 (InterPro:IPR009836); BEST Arabidopsis thaliana protein match is: Protein of unknown function (duplicated DUF1399) (TAIR:AT2G22660.2); Has 24258 Blast hits to 6156 proteins in 640 species: Archae - 4; Bacteria - 13513; Metazoa - 5207; Fungi - 694; Plants - 2964; Viruses - 274; Other Eukaryotes - 1602 (source: NCBI BLink).
Link
InterPro Scan - TAIR