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ET13596

CSHL Arabidopsis genetrap mutant lines

Original: ET13596

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: ET13596

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1092139 [Map]; Strand: c
      • AT4G02482.1 - [+] show detail - chloroplast outer envelope GTP-binding protein, putative
        Distance: 0; Region: intron1 (CDS)
      • AT4G02485.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: -542; Region: promoter
    Flanking Genome Sequence: ET13596 - 5-prime edge 
    CCTACTTTCT CCCTGGTGGT GCCTACATTT CCCACGAGGA CGACTCATTT 
    TCCGAGTGCG ATCTGTTTCT CGAGTTTGAG ACCACTGGGA ATTTTCTCAC 
    CAAAGAATGT CACTAACCCT CCAAGAGTCA GCTCGTTCCT TCTTGAGTTA 
    CATAAGTTGC TCACTTCCCT GGATATGAAG CCCTGCCATG GTAGAACCAT 
    TGTCCCCATT CTAATTTGGA AGATTTATGA ATTGATGATT AAAAATACAA 
    AATTTACGAT TTTATATAGA GAATATTACA CTCGACACTT TATTAAAATT 
    ATTTCCGTGT TTAGGCACTT TCAAAAGATT AGGCATTTTC TCTATGTTTT 
    TTTACTAAAA TACCCTCTTA ACTAAAATAT TCTCTTAACC CACGTTTTCT 
    CTCTTTCTCT CTCT

AT4G02482.1

Model type
Protein coding
Short Description
chloroplast outer envelope GTP-binding protein, putative
Computational Description
chloroplast outer envelope GTP-binding protein, putative; BEST Arabidopsis thaliana protein match is: translocon at the outer envelope membrane of chloroplasts 159 (TAIR:AT4G02510.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02485.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G31600.2); Has 487 Blast hits to 486 proteins in 165 species: Archae - 0; Bacteria - 93; Metazoa - 167; Fungi - 38; Plants - 88; Viruses - 3; Other Eukaryotes - 98 (source: NCBI BLink).
Link
InterPro Scan - TAIR