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ET13602

CSHL Arabidopsis genetrap mutant lines

Original: ET13602

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13602

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 303039 [Map]; Strand: w
      • AT4G00730.1 - [+] show detail - Homeobox-leucine zipper family protein / lipid-binding START domain-containin...
        Distance: 0; Region: exon4 (CDS)
      • AT4G00730.2 - [+] show detail - Homeobox-leucine zipper family protein / lipid-binding START domain-containin...
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: ET13602 - 3-prime edge 
    ATGAAACGGT AGAGGATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTT 
    AGAACTCGCT GTCGGCACCA ACAACGGTGG ACATTTCGCT TTCCCTCCTG 
    ATTTCGGCGG TGGTGGTGGT TGCTTACCTC CGCAGCAGCA GCAGTCGACG 
    GTGATTAATG GGATTGATCA GAAGTCAGTT TTGCTGGAGC TGGCTTTAAC 
    TGCTATGGAT GAGTTAGTGA AGCTTGCTCA GAGTGAAGAA CCGTTATGGG 
    TCAAAAGCTT GGACGGTGAG AGAGACGAGC TTAACCAAGA TGAGTACATG 
    AGAACATTTT CATCTACTAA ACCAACCGGT TTAGCTACTG AAGCTTCTAG 
    AACCTCTGGT ATGGTCATCA TCAATAGCTT AGCTCTCGTC GAGACTTTAA 
    TGGACTCCGT AAGTTTTCAA TTTTTTGCGA TTTTTTGTTT TTATTCCCAC 
    ATCTTTTTTT TGTTCTCTGA TTATATTTTT T

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 303100 [Map]; Strand: w
      • AT4G00730.1 - [+] show detail - Homeobox-leucine zipper family protein / lipid-binding START domain-containin...
        Distance: 0; Region: exon4 (CDS)
      • AT4G00730.2 - [+] show detail - Homeobox-leucine zipper family protein / lipid-binding START domain-containin...
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: ET13602 - 5-prime edge 
    CTTTCTCCCT GCTAAGGAGG AGTTGTAGTG GTGATTATGG TGGTGGCCAA 
    GGAACTTACC GGTGAGGTTA CAGACACGAT CAAGCTCGTC TTTTAAACGA 
    GCGTTTTCGA TACGGAGATG ATGTTCTTCA AGAGAGACAT CACCAAGCAT 
    GGCAGGTCCA CCACAATTGG TGCAGATTGG ATTCCTCATT GCTTCACGAA 
    TAGACATGTT CTCAGCTCTT AACTTATCGT TCTCTTGTCT CAATAACGCG 
    TTCTCATGCC TCTCTAATTG AGTCTGCGCC ACAATATGAT TTTATTACAA 
    AAGAATTCAT TTTTTGGGAT TAAAGATGTG ATTTAATCTC CACATACCTC 
    TTTTNNNNTG CTGAACAGAN TTTGGAACCC AGAACTTGAC TTGTCTTGTC 
    TCTAAAGCAA GTCTCTTACT TAGTTCTAAT CTTTGTTTCT CGTCTGGATG 
    CGGACACTCT TTGAACATAC TGAAAGCAAA AACTCAGATT CATTAGATCG 
    AATAAAAGAG ATGATGGTAA TAACAATATG GATATTGGAT CGAAAGGTAT 
    AATTACGATT CGAGTTCTTG GATTTGTTGA GGAGTGTGTC GGTGATAACG 
    TTTCTTCCGA GGAGGCTTAT CAGCAGCGTC TTGATCTTCA CCGGAGATAC 
    CTTCAACGTT ATCACTA

AT4G00730.1

Model type
Protein coding
Short Description
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
Curator Summary
Encodes a homeodomain protein of the HD-GLABRA2 group. Involved in the accumulation of anthocyanin and in root development
Computational Description
ANTHOCYANINLESS 2 (ANL2); FUNCTIONS IN: transcription regulator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: root development, anthocyanin accumulation in tissues in response to UV light; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeodomain GLABROUS 1 (TAIR:AT3G61150.1); Has 12660 Blast hits to 12608 proteins in 595 species: Archae - 0; Bacteria - 0; Metazoa - 9962; Fungi - 223; Plants - 2228; Viruses - 1; Other Eukaryotes - 246 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00730.2

Model type
Protein coding
Short Description
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
Curator Summary
Encodes a homeodomain protein of the HD-GLABRA2 group. Involved in the accumulation of anthocyanin and in root development
Computational Description
ANTHOCYANINLESS 2 (ANL2); FUNCTIONS IN: transcription regulator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: root development, anthocyanin accumulation in tissues in response to UV light; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeodomain GLABROUS 1 (TAIR:AT3G61150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR