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Mutant Lines
ET13604

ET13604

CSHL Arabidopsis genetrap mutant lines

Original: ET13604

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13604

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 352048 [Map]; Strand: c
  - AT4G00830.3 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
    Distance: 0; Region: exon1 (5UTR)
  - AT4G00830.4 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
    Distance: 0; Region: exon1 (5UTR)
  - AT4G00830.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
    Distance: 0; Region: exon1 (5UTR)
  - AT4G00830.2 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
    Distance: 0; Region: exon1 (5UTR)
Flanking Genome Sequence: ET13604 - 3-prime edge
```
ATGAAACGGT AGAGGATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
TCCAGGACTC AATCTTGCTG CACTGAACTA TGTCAACCAC CATCCCGTTC 
TGTTTTTCAT CTCACTCGAC CANCGGACAA CCGAAGCGAA ATCCCTAATT 
TCCCACAACA CGAAATACCA ATTTCCCCAA TTCGAAAACA AACACGGTCT 
GGTATGCCGC GAAAATTCTC CATTTCTACT TTTCTTATAC ATTTGTTTTG 
GTTGTTTCAT ATAAATACTT CTCATCTTCT TCGATTTTGT TACCCTCCCC 
CAAACAATAT AAAAAAAAAA GGATAAACCC TAGTTCCTTT CTCAAACTGT 
TTCAAGTTCA AATTTTTATT TCTGAGCTTA ACGGGGGAGA AATTTGCTTT 
CTGGAAAGAT GGGGGAGTAA CAATCTCTAA TTTCATGGGT GGCTCCGG
```

5 prime edge [+] show sequence

Chromosome: 5; Position: 24280934 [Map]; Strand: c
- AT5G60360.1 - [+] show detail - aleurain-like protease
  Distance: 0; Region: exon3 (CDS)
- AT5G60360.2 - [+] show detail - aleurain-like protease
  Distance: 0; Region: exon3 (CDS)
- AT5G60360.3 - [+] show detail - aleurain-like protease
  Distance: 0; Region: exon3 (CDS)

CCTACTTTCT CCCTGGTCCT GGACTTACTG TTTCAGGAAG AGCTGCTTCT 
GTGACCTTGT GGCTGCCCTT TAAAGTGGCA GAGCAGTTCT GAGCAGCACC 
AAGCTTGGTC CTTTGAAACT CTTGCCATGT CAAATCAGCA AATTCTGTAT 
AGATTCAAGA CACAATTAGC AATATTTAGG TAAATCATTA TTCATCAAAC 
CATTGCAGTG TCAGTTCTAG GACAAATAAA GATACGATCC CTACAACTCT 
ACAAGGAAGT AGGAACGAGA ACCAATCTTC AACTCAGGAC AGCTAAATCT 
TAAAGAAGCA GAACAATGTT TTTGACACAA ACTAGTCTCT CACACAGAGT 
TCATAGACTC ATAAACTCTG TAAAGTCTAG AGTCCCAATA ACAATCTTGA 
ATCACGTGAA CGAAAGAAAA AAATCAAAAT TTAAAAATAT TAACTTGGAA 
GATTCCAAGA CAGAACAAAA GTTAGTTTCC ACGTTTTCCC ACAGTGTCTT 
TTATACATAC GTTTACTTCC TTAAGTACAA ACTCAGGAGA AGAAAGATAA 
AAAAAAAAAA CTTTCCATTT ACCCCCGGTT TGGAAAAAAA ACCCTTTCTG 
GTGGGGGGAT CGGACCAAAC AAAAATTCC

AT4G00830.1

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G52660.2); Has 49171 Blast hits to 28860 proteins in 1092 species: Archae - 87; Bacteria - 2901; Metazoa - 24152; Fungi - 5892; Plants - 6872; Viruses - 415; Other Eukaryotes - 8852 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00830.2

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G52660.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00830.3

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G52660.2).
Link: InterPro Scan - TAIR

AT4G00830.4

Model type: Protein coding
Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G52660.2).
Link: InterPro Scan - TAIR

AT5G60360.1

Model type: Protein coding
Short Description: aleurain-like protease
Curator Summary: Encodes a senescence-associated thiol protease.
Computational Description: aleurain-like protease (ALP); FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: response to ethylene stimulus, proteolysis, aging; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT3G45310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G60360.2

Model type: Protein coding
Short Description: aleurain-like protease
Curator Summary: Encodes a senescence-associated thiol protease.
Computational Description: aleurain-like protease (ALP); FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: response to ethylene stimulus, proteolysis, aging; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT3G45310.2); Has 8274 Blast hits to 8196 proteins in 788 species: Archae - 71; Bacteria - 343; Metazoa - 3342; Fungi - 8; Plants - 1876; Viruses - 142; Other Eukaryotes - 2492 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G60360.3

Model type: Protein coding
Short Description: aleurain-like protease
Curator Summary: Encodes a senescence-associated thiol protease.
Computational Description: aleurain-like protease (ALP); CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT3G45310.1); Has 8252 Blast hits to 8181 proteins in 792 species: Archae - 69; Bacteria - 357; Metazoa - 3329; Fungi - 10; Plants - 1862; Viruses - 142; Other Eukaryotes - 2483 (source: NCBI BLink).
Link: InterPro Scan - TAIR