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ET13605

CSHL Arabidopsis genetrap mutant lines

Original: ET13605

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13605

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19683326 [Map]; Strand: c
      • AT5G48560.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -680; Region: promoter
    Flanking Genome Sequence: ET13605 - 3-prime edge 
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    ACTTATACAA GTTAATATAT ATCTAATGAA TAACGCCATA GATTTCTAGA 
    ATTCAAACTT ATATAGTTAA AATCTGAGAA GATCTCTTCA AGAACAGTGT 
    TTATAAAGTA TAGTGTTAGT TGTTAACAGT ACTCAGTAAA TACAACCAAC 
    TCTAACAAAA AAAATTATAT TGGCTAATTG ACTCTTAAGT AAGTTAATCT 
    CCAATGAATA ACGTCATAGA TTTCCATAAA TCTGAGATGA TCTCTGCAAG 
    AACGGAGGTT TTTTTTTGGT CAATAAGAAG AACAAATTTA TGTACTAAAA 
    TGTTCCTTTA GAAAGAAGTG AACAAGTGGG AGACCGTGCT TGTAAATCCC 
    TAATAGTAGA CTTTCTTTCA TTTAAGAAAT TTAAAAATGA TTTCAAATAG 
    AATAAAATAA TAAATTAAAC TTTGACATTT CATGTAAAAT TTTACGTCGA 
    TATTGTAAAA CAATTACATA TTTATTAGCA AATATCTCTC AACGTCAAAG 
    GCCCGGCAAA CAATTCCAAA TCTCCGCCCG TTACGGTGCA ACACACATAA 
    TGATAATTGA AATTACTATT TTTTTATAAC TATATTACGT TAAATGATTT 
    ATTGATATAT AAAAAACGTA ATTTAATGTT CCCTTAAACA ACTATATAAC 
    CCAACTTAGC GACCACTTAA GCATTTCCCT TACT

  • 5 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET13605 - 5-prime edge 
    GGTAAACAAT AAACTCTTTA TTTTTGAACG TTTTTTTTTT GGGCCCCTTT 
    TTTAGGAGGG TCTTTGGGAC AAGTTCATTC TTGGTAGCTT TAAAAAAAAA 
    CCGAAAAAGG TTTTATTGGG GGTTTTTTTC CCGTTTCCCA AAAAACGTTG 
    AAAGGTGGAA GATTTCCAAA TTGTTTCCCA ACAGGAAAGG GGGGATAAAC 
    TTTCTGGGCT TAAGGGGGGA

AT5G48560.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G07340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR