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ET13606

CSHL Arabidopsis genetrap mutant lines

Original: ET13606

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13606

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 75498 [Map]; Strand: w
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: -109; Region: promoter
      • AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: -120; Region: promoter
      • AT2G01070.1 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: -22; Region: promoter
      • AT2G01070.2 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: -22; Region: promoter
    Flanking Genome Sequence: ET13606 - 3-prime edge 
    ATGAAACGGT AGAGGATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
    GGTGGACCAA CCAACTTAAT ATAATGGTTT GGGCCTTAGA ATGGTTTGGG 
    CCTATACCGA GAGGCCCGGC TTACCCAGAA AGAAATGCAG CAATAGTCAA 
    TGCCACTGCC TGGAATTCGT CGATCGAGCG ATAAGAAGAA GACTGGAATT 
    TTTTTGAGGA GGACTCTGCT CCATCGCCGC CCGCCCTGTA ACCCACCGGA 
    CTCAGTAAAC TAGTCTGTAA CACAATATCT TCTATTTCAG ATAAGATTTA 
    GCTTGGAGAA GAGCAAGTTC CGCAAATGGA GGGGCGTCGT GTATAGATCC 
    ACCACCCACA GGTTCGTAGA TTCCATAACC TTGGATTGTG TTTTCTTTTT 
    GCTTTCTCGG CGACAAATTC CTCCGATTTT AGTGAACATG TCTCTGATTT 
    TGGTGTCCTG TGGTGGATCT GCCGGAGCAA GTCTTAAACT TGACTTGGAC 
    TGTTTTTACT AGCTAATTCT GGGCGCTATT TCGTCTTCCT TGTTTCCATT 
    TCTATCTCTT TCTCTCTGGC CAGTCCTCAT ATGTTATCAT TTCCTAGCTT 
    TGCCACTACT CATTACTTTC CCTTTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 75554 [Map]; Strand: w
      • AT2G01060.1 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: -165; Region: promoter
      • AT2G01060.2 - [+] show detail - myb-like HTH transcriptional regulator family protein
        Distance: -176; Region: promoter
      • AT2G01070.1 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT2G01070.2 - [+] show detail - Lung seven transmembrane receptor family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: ET13606 - 5-prime edge 
    CTTTCTCCCT GGGTCCCCAA AGTCAGCAGC AGCTAGAACA AGAGCGACTC 
    TGCAGCTGCT CTTCTCCCGC TTCCTTCCTG TTAGTTAGCC TCAGAGATCC 
    TCGTTCCCCG ATAATGGATT TGGGAAAACT GATCCAGCTG TCTGCGCTGC 
    TGTGCCCATT TCTTCTATCA TTACACTTTA GAATCGCTGG GGCCTCCGCC 
    CACATCTACT CTTCCCAGCC CTTCCACGAT GTCGGTAATT CTCTCCTCCT 
    CTACGGTGGC AGCGAGGGCA TCTTCGCCTC TTCCCGATCT TTAATCAGGT 
    ATATTCTATG GATTACATTT TCAACTCTTT TGATGCTCTC TACTCTACTC 
    TACTCATCCT CCCTCCTCAC TGCAGGTTTG AGAACATCAC TCTCTGGAGG 
    ACAATTACCG GTAAGGGCCA CCGCAGCAAT GGGTTAGTTC AAGCAGTGAT 
    CTTTGAAGCC TCCGATCGTA ACAATATCGG TGGTTCAGCT TACGGAGGCC 
    AAAGATCTAT TTGCTGCACT CCAGATCTGG CCAAGCTTCA AGGCTGTAAG 
    CAGGGTGAGA TCATTAGGAT TCCTTCTCCA CATGACCCTC AATGGCCTAT 
    CCTCTTACCT GTCCGCTTTA AAGGAAAACG CTCGTCTGCT AAGATGGCAG 
    ACACTGA

AT2G01060.1

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04450.1); Has 1678 Blast hits to 1660 proteins in 60 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 1660; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01060.2

Model type
Protein coding
Short Description
myb-like HTH transcriptional regulator family protein
Computational Description
myb-like HTH transcriptional regulator family protein; BEST Arabidopsis thaliana protein match is: myb-like HTH transcriptional regulator family protein (TAIR:AT3G13040.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01070.1

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01070.2

Model type
Protein coding
Short Description
Lung seven transmembrane receptor family protein
Computational Description
Lung seven transmembrane receptor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT1G72480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR