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ET13610

CSHL Arabidopsis genetrap mutant lines

Original: ET13610

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13610

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5525713 [Map]; Strand: w
      • AT3G16290.1 - [+] show detail - AAA-type ATPase family protein
        Distance: -718; Region: promoter
      • AT3G16300.1 - [+] show detail - Uncharacterised protein family (UPF0497)
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET13610 - 3-prime edge 
    CGGTAGAGGA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAGTTGCA 
    GATCAGATAA TAGGATATGC AATGGTGAGT GGAGGATCTG CAGCTTTAGG 
    AGTGACGAAT ATGAACAGAA CAGGAATCAG ACACATGCCT CTTCCTAATT 
    TCTGCAAATC TCTTGGTTTC TTCTGGGACC ATCTCGCTGG CTCCATCGTC 
    TTCGCCTTAT TCGCGTTTCT CCTCCTCGCC G

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 13281245 [Map]; Strand: c
      • AT1G35780.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -956; Region: promoter
    Flanking Genome Sequence: ET13610 - 5-prime edge 
    TCCTACTTTC TCCCTGGTGT TTGGGGGTTT CATTCCTCGC CGGCTTGTAT 
    TCCGGAAGAT TATATCTTCC CGGCTTTGTC GTCCCGTAAT TCACTCGGAC 
    TTATGTATCT GATCATGGTT TGTGATAATA ATAAAACTAG CTTTGTGAAG 
    AAAAAGAAAA GCTAAAACAT TATGTTGCTA AGTTAGTCAA AGCTACTCAT 
    AAACCCACCT GTCTAGCTAA ACATCACAAA CTAAAATGAA AAGAATTTAA 
    ATAAATTTAA AAAAGTACAT AACTTAAGCA ATCTTTCACT TCCAAACAAG 
    GCATGTCAAT CATTATCTGC GTTAAATATC TAGTATGCTG CTTATTCTTA 
    ACATATTTAT CATGCAAAGT TATATTATTG AGCGAAATAT GCGTTTTTGT 
    TGTACTCAAT AATAAATATA ATTTACATTT ATATATCTAT TCCCATTAAT 
    AACATCTTAT CATATACTAC AAGATGATTT ATCTATAACG AACTTTCAAG 
    AAAAGAAAAA AACGTAATAT TTTAAATTTT GCGCTAAAAA TTAAATTTTA 
    AAAACATTTT TTAATTTTCA TCTAAAAAGT TCCTATGAAC ATTACAAGAT 
    AATTTACACA TAACAAGCCC CACAAAATTG AAACTATAAT TATCTACATT 
    TTTAGAAATT CTTTACGCGT AGTATTGAGG TTTGTTACAC AATCCAAGTA 
    ATTAATAAAA GAAACAAAAA ACGTCAACGT ATCTTTATCT TTAAGGGTAA 
    TTTGTTAAAG AATATCCCAT GTGTACAAAA CAACCAAATA TTTCAAAATT 
    TAACTAAAAC CGGC

AT1G35780.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78150.2); Has 145 Blast hits to 144 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G16290.1

Model type
Protein coding
Short Description
AAA-type ATPase family protein
Computational Description
embryo defective 2083 (EMB2083); FUNCTIONS IN: in 8 functions; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Peptidase M41 (InterPro:IPR000642), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: FTSH protease 1 (TAIR:AT1G50250.1); Has 40436 Blast hits to 36159 proteins in 3226 species: Archae - 1511; Bacteria - 13353; Metazoa - 6817; Fungi - 4228; Plants - 3474; Viruses - 31; Other Eukaryotes - 11022 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G16300.1

Model type
Protein coding
Short Description
Uncharacterised protein family (UPF0497)
Computational Description
Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT1G79780.1); Has 429 Blast hits to 429 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 429; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR