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ET13611

CSHL Arabidopsis genetrap mutant lines

Original: ET13611

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13611

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18419656 [Map]; Strand: w
      • AT1G49760.2 - [+] show detail - poly(A) binding protein 8
        Distance: 0; Region: exon9 (CDS)
      • AT1G49760.1 - [+] show detail - poly(A) binding protein 8
        Distance: 0; Region: exon9 (CDS)
    Flanking Genome Sequence: ET13611 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACTCAGA ACATCCATTG 
    CTTCTGTAAC TTTAGCTTTA AGTGCCTCTG GTGATTCCAG CAAGTGAAGT 
    ACTTCGGTTT GGTCCATTTC AAGAAGCATT CCCGTGACTT TAGCTGCGGA 
    TTCTGGCTCC AGCTGCTCCA CAAGCGGGTA TAGATTCTCA CCAAGCATCT 
    GTATAACGAA GAAACATAAC AGGTTTAAGA AAGACACATT TTTCTTAGTT 
    GTTTCCGAGC TGTTAGAAAC AAATCATTTG ACTTTACCGT TCTCTGTTGC 
    TCTGGAGCTG CATTCGCAAG CCGTGTAGCC AAAGCTACAA TAGGAACAGG 
    TTGAGAAGTA GGCGAGTCAC GATGATGCAC ACCACCACCA CTTGAGACGT 
    CATATGGAAC AGAAAGCATG TTTTGAGTAG GACCAGGCAT TGTGTTTACA 
    TCTCGCTGAG GATACCGATA CATTCGACCT CTTGGATGCA TCTGTAGAGA 
    AACAGATTGA TGCAAAATGT AAGCATGCTA TCGATTTTAA ACATGTGGAG 
    AAAGTCTTGG GCCTAAAGCA AAACTTAACC TGCTGCTGCA TCATAGG

AT1G49760.1

Model type
Protein coding
Short Description
poly(A) binding protein 8
Curator Summary
polyadenylate-binding protein, putative / PABP, putative, similar to poly(A)-binding protein GB:AAF66825 GI:7673359 from (Nicotiana tabacum). Highly and ubiquitously expressed. Member of the class II PABP family.
Computational Description
poly(A) binding protein 8 (PAB8); FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Polyadenylate-binding protein/Hyperplastic disc protein (InterPro:IPR002004), RNA recognition motif, RNP-1 (InterPro:IPR000504), Polyadenylate binding protein, human types 1, 2, 3, 4 (InterPro:IPR006515), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: poly(A) binding protein 2 (TAIR:AT4G34110.1); Has 986469 Blast hits to 485112 proteins in 21501 species: Archae - 20784; Bacteria - 581960; Metazoa - 196391; Fungi - 29721; Plants - 62748; Viruses - 68352; Other Eukaryotes - 26513 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G49760.2

Model type
Protein coding
Short Description
poly(A) binding protein 8
Curator Summary
polyadenylate-binding protein, putative / PABP, putative, similar to poly(A)-binding protein GB:AAF66825 GI:7673359 from (Nicotiana tabacum). Highly and ubiquitously expressed. Member of the class II PABP family.
Computational Description
poly(A) binding protein 8 (PAB8); CONTAINS InterPro DOMAIN/s: Polyadenylate-binding protein/Hyperplastic disc protein (InterPro:IPR002004), RNA recognition motif, RNP-1 (InterPro:IPR000504), Polyadenylate binding protein, human types 1, 2, 3, 4 (InterPro:IPR006515), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: poly(A) binding protein 2 (TAIR:AT4G34110.1).
Link
InterPro Scan - TAIR