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ET13612

CSHL Arabidopsis genetrap mutant lines

Original: ET13612

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13612

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25371340 [Map]; Strand: w
      • AT5G63290.1 - [+] show detail - Radical SAM superfamily protein
        Distance: -419; Region: promoter
      • AT5G63300.1 - [+] show detail - Ribosomal protein S21 family protein
        Distance: 0; Region: exon1 (CDS)
      • AT5G63300.2 - [+] show detail - Ribosomal protein S21 family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13612 - 3-prime edge 
    ATGAAACGGT AGAGGATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
    AATACGAGAT TCGCGTTCGC CAGCGAAGGA TACGCCACTC GATTGATGAC 
    GTCATCGTGC TCGGCCGTTA AAATCTTCGT CGTCATCGAC AAATGCTGTG 
    ACGTTCTCGC GGATACGGAA GACGGAAGCG TGATAGGTTT CAGACTCGAC 
    GGAGACGGTG GTTTCGACGA GAGAAGGGAA GAGAGAAGCT CCGAGAGAGA 
    GACTATCGAT TCTAGCGCCA TTTTTTTTTC CGTCTGAATA AGTGAATAAT 
    CGTTTCATTC TTATTATAAT ATTTTTCAAT TGGAATTAGG GGGTTAATTA 
    GATGGTCAAG TCTTTAGTGA GTCTACTTTC TGACTAAAAC GACGACGTTG 
    AAGCATATAA AACGAGACCA GTGAACTTTG ATCTTTGAAA GCTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25487561 [Map]; Strand: c
      • AT5G63670.2 - [+] show detail - SPT4 homolog 2
        Distance: -366; Region: promoter
      • AT5G63670.1 - [+] show detail - SPT4 homolog 2
        Distance: -420; Region: promoter
    Flanking Genome Sequence: ET13612 - 5-prime edge 
    CCTACTTTCT CCCTTACGGG AACATATGTG CACCTTGGGT TCAACAAATA 
    ATCGAATGAA ATTTTGAATT AACTAAAAAT GTATATTCTT ATATATATAT 
    ATTCTCGTAA GAGAAGCTCA TTTATGATAT TGATAACCTT TAGAGTGCTA 
    ATTCAAAACA TATATCAATG ATATTTTTAT TAAGTTAATT TTCACTACAC 
    TTAATCTATA TATGTATATA TACATATAAC ACATAAATTT TTATTAAAAT 
    TGTTTAATTT CACTCCAAAT AGATCTCATC ATTTTTAACT AGATTGTTTA 
    ATTTGAATTT ATTATACCCA AACCAAGAAT AATTAATCTA CAACGTAAAA 
    AAGACATAGA TATGGGGGAA AACAGTTC

AT5G63290.1

Model type
Protein coding
Short Description
Radical SAM superfamily protein
Computational Description
Radical SAM superfamily protein; FUNCTIONS IN: oxidoreductase activity, iron-sulfur cluster binding, coproporphyrinogen oxidase activity, catalytic activity; INVOLVED IN: oxidation reduction, porphyrin biosynthetic process; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Putative oxygen-independent coproporphyrinogen III oxidase (InterPro:IPR004559), HemN, C-terminal (InterPro:IPR010723), Radical SAM (InterPro:IPR007197); Has 10146 Blast hits to 10146 proteins in 2456 species: Archae - 113; Bacteria - 8401; Metazoa - 78; Fungi - 4; Plants - 37; Viruses - 0; Other Eukaryotes - 1513 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G63300.1

Model type
Protein coding
Short Description
Ribosomal protein S21 family protein
Computational Description
Ribosomal protein S21 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: Ribosomal protein S21 (InterPro:IPR001911); BEST Arabidopsis thaliana protein match is: Ribosomal protein S21 family protein (TAIR:AT3G27160.1); Has 1443 Blast hits to 1443 proteins in 604 species: Archae - 0; Bacteria - 1229; Metazoa - 17; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G63300.2

Model type
Protein coding
Short Description
Ribosomal protein S21 family protein
Computational Description
Ribosomal protein S21 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: Ribosomal protein S21 (InterPro:IPR001911); BEST Arabidopsis thaliana protein match is: Ribosomal protein S21 family protein (TAIR:AT3G27160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G63670.1

Model type
Protein coding
Short Description
SPT4 homolog 2
Computational Description
SPT4 homolog 2 (SPT42); FUNCTIONS IN: positive transcription elongation factor activity, zinc ion binding; INVOLVED IN: positive regulation of transcription, N-terminal protein myristoylation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation Spt4 (InterPro:IPR009287), Transcription initiation Spt4-like (InterPro:IPR016046); BEST Arabidopsis thaliana protein match is: Transcription initiation Spt4-like protein (TAIR:AT5G08565.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G63670.2

Model type
Protein coding
Short Description
SPT4 homolog 2
Computational Description
SPT4 homolog 2 (SPT42); EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation Spt4-like (InterPro:IPR016046); BEST Arabidopsis thaliana protein match is: Transcription initiation Spt4-like protein (TAIR:AT5G08565.1).
Link
InterPro Scan - TAIR