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ET13616

CSHL Arabidopsis genetrap mutant lines

Original: ET13616

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13616

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 15377096 [Map]; Strand: c
      • AT5G38400.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 795; Region: intergenic
      • AT5G38410.1 - [+] show detail - Ribulose bisphosphate carboxylase (small chain) family protein
        Distance: 77; Region: intergenic
    Flanking Genome Sequence: ET13616 - 3-prime edge 
    GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA CTTTCAAGTG 
    GACCATCCTT TTCCTTTAAG GGAATAACTC TGTGTGACTG AGATCTACAA 
    ACACATGGTA CACACTTCAC AGTCCTTATA AAGTAAATTT ACTTATTATT 
    AAGAAAATAA GATTTTGTAA CTTTTTTCCT CTTAAAACAA TGGACAAATA 
    TGAATACAAA TCCATATGTC ACTATTATCT ATATTTACAC AATTTATTCG 
    ATTTTTTGGA TGGTGGCTTA TCTCATCGGA AATTTTCAAA CTAGTTAACC 
    ATCGGAAAAA ATCAAGACGC ACGGATATAT AAATTACATA TTCATAAATC 
    AGACATTTGA CAATCCGATA GAAATTGTCT CATAAAGAGA AAAAGAACAC 
    AGACAATAGG AAATGAAATG AGCAGAGATA ATTCATAAGA ATGGTTTAGA 
    AAAGAAATTA AGCTTCGGTG AAGCTTGGGG GCTTGTAGGC AATGAAACTG 
    ATGCATTGGA CTTGACGGGT GTTGTCGAAT CCGATGATCC TAATGAAGGC 
    GCCCGGGTAC TCCTTCTTGC ATTCTTCAAC TTCCTTCAAC ACTTGAGCGG 
    AGTCGGTGCA TCCGAACAAT GGAAGCTTCC ACA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 15377034 [Map]; Strand: c
      • AT5G38400.1 - [+] show detail - unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae ...
        Distance: 733; Region: intergenic
      • AT5G38410.1 - [+] show detail - Ribulose bisphosphate carboxylase (small chain) family protein
        Distance: 139; Region: intergenic
    Flanking Genome Sequence: ET13616 - 5-prime edge 
    CCTACTTTCT CCCTGCTTGA AAGATGATAG ACACATTTGT GGACGGTGCC 
    AGTGCCATAT ACATAAGATA GGCTTGCGGA TAAGAGTCCA CTTTTAAATT 
    TATGATTAAG ACCCTTTTCT TAATGATCTC ACATATCAAT CTGAAACTTG 
    TGTGTCAACA TTGTCTTAAT GACCTGAAAT ATCAATTTGA AACTTGTGTG 
    TTCATTGACT TAATGAAACT ACAAGAAATC ATCAAATGTG TGAACGGAAA 
    GTTCTTTGAA GTGTTTTTTA TATAATTTGT GTAGACTTAC ATGCGTGTAG 
    TTTAAACTTT AATATTAACT AAAATGTATT TAAATTAGGG TTTATCTCCT 
    AAAATTGATT CTAAAATGGT TAACCCAATA TAGGTAGTTT ATGTGTTGGT 
    AGATCTACCG AAAATCCAAT TAGTTTGAAT CTTGCGGAAT AGAAAAAAAC 
    AAACTATAAT CTTGATTTTT GGATCCCACC GTTGTGGATG CTCTAATAAT 
    GCAAGTCATG CACGTTTCAC CAGCGTCTAA GTCTGTATAT ACGCTTTTGG 
    ATTTTGTTCG AAATATTGAA ACACCAAATA AAACAAAAAA AAATACTGAA 
    AATCCATTAT GACAAATCTC TGTATATAAA

AT5G38400.1

Model type
Protein coding
Computational Description
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G38410.1

Model type
Protein coding
Short Description
Ribulose bisphosphate carboxylase (small chain) family protein
Computational Description
Ribulose bisphosphate carboxylase (small chain) family protein; FUNCTIONS IN: ribulose-bisphosphate carboxylase activity; INVOLVED IN: carbon fixation, response to blue light, response to red light, response to far red light; LOCATED IN: in 8 components; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase (small chain) family protein (TAIR:AT5G38430.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR