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ET13618

CSHL Arabidopsis genetrap mutant lines

Original: ET13618

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13618

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26124336 [Map]; Strand: c
      • AT5G65380.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: ET13618 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTATTGA AAATGTATCC 
    TAATTAATAT TATACATTTA TACCCCATTA AGTATTGTAT TGTTTTATTG 
    CAAATTCCAT GTTCACAAAT AAAACTGACA GTACTATCGT ATTTTTGTCG 
    ACGCACATTA TTCTGACAGT GACATGCATT CACTATGTAT AGTTGATAGT 
    TGATATAATA AATACTGATT GGTAATTACA TTTATACGAC CGTTTTAAAA 
    TTCCGATATA CTGTATTTGA AAAATACAAT CCTTGTTATT CACGAACCCA 
    ACATGACATC TATTCCGCAT TCATTGTAAG TTTCCCACCT TTAATTTTCA 
    TGGGCCCGTT GTAACGACCT AACATAGTTG CTAGTTGATA TTTAATATGA 
    TTGTACAAAA ATTACACTAA ACTG

AT5G65380.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, ripening, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT5G44050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR