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ET13627

CSHL Arabidopsis genetrap mutant lines

Original: ET13627

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13627

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4758720 [Map]; Strand: c
      • AT5G14740.1 - [+] show detail - carbonic anhydrase 2
        Distance: 0; Region: intron1 (CDS)
      • AT5G14740.2 - [+] show detail - carbonic anhydrase 2
        Distance: 0; Region: intron1 (5UTR)
      • AT5G14740.3 - [+] show detail - carbonic anhydrase 2
        Distance: 0; Region: intron1 (CDS)
      • AT5G14740.4 - [+] show detail - carbonic anhydrase 2
        Distance: 0; Region: intron1 (CDS)
      • AT5G14740.5 - [+] show detail - carbonic anhydrase 2
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: ET13627 - 3-prime edge
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAATCTAGA 
    GGTACTTTCT TGTACAAATA TGTGAAATGT TTTGCATATA TTAATGTTTG
    AAATATTAGA CTTAGTAAAT CCGTTTTGTT AATATCAGAA GTTAGTATGA
    GGATTAACTG GATGTTACTA AGCAACCCCG ACAATTTGAT TCCTTGTTCT
    GACTCAAAAA CCTTATACAC CTTTAAAATT TTATTTTACC AAATTGCCAA
    GTTTACTGTT TTACGTAAAT ATTAATGATC GAGATAAAAG TTTTAAGAGA
    AGTTCTTTAT TCCACCACAA GAAAAGAAAG ACACTTTTCT ATATATGCAC
    CTCACCTTTC GTTTTCATTA TCTTCTTTCA AAGGGTATTT AATTTTACAA
    TATTACTAGC TATTACTCTT GTTTGTAGTA TAAATATCCT

AT5G14740.1

Model type
Protein coding
Short Description
carbonic anhydrase 2
Curator Summary
Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm. Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform.
Computational Description
carbonic anhydrase 2 (CA2); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: defense response to bacterium, carbon utilization; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: carbonic anhydrase 1 (TAIR:AT3G01500.2); Has 5122 Blast hits to 5105 proteins in 1527 species: Archae - 36; Bacteria - 3955; Metazoa - 59; Fungi - 207; Plants - 361; Viruses - 0; Other Eukaryotes - 504 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G14740.2

Model type
Protein coding
Short Description
carbonic anhydrase 2
Curator Summary
Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm. Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform.
Computational Description
carbonic anhydrase 2 (CA2); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: defense response to bacterium, carbon utilization; LOCATED IN: cytosol, chloroplast thylakoid membrane, apoplast, chloroplast, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: carbonic anhydrase 1 (TAIR:AT3G01500.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G14740.3

Model type
Protein coding
Short Description
carbonic anhydrase 2
Curator Summary
Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm. Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform.
Computational Description
carbonic anhydrase 2 (CA2); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: defense response to bacterium, carbon utilization; LOCATED IN: cytosol, chloroplast thylakoid membrane, apoplast, chloroplast, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: carbonic anhydrase 1 (TAIR:AT3G01500.3); Has 5107 Blast hits to 5090 proteins in 1530 species: Archae - 36; Bacteria - 3948; Metazoa - 60; Fungi - 213; Plants - 355; Viruses - 0; Other Eukaryotes - 495 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G14740.4

Model type
Protein coding
Short Description
carbonic anhydrase 2
Curator Summary
Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm. Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform.
Computational Description
carbonic anhydrase 2 (CA2); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: defense response to bacterium, carbon utilization; LOCATED IN: cytosol, chloroplast thylakoid membrane, apoplast, chloroplast, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: carbonic anhydrase 1 (TAIR:AT3G01500.3); Has 5114 Blast hits to 5097 proteins in 1529 species: Archae - 36; Bacteria - 3948; Metazoa - 60; Fungi - 213; Plants - 357; Viruses - 0; Other Eukaryotes - 500 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G14740.5

Model type
Protein coding
Short Description
carbonic anhydrase 2
Curator Summary
Encodes a beta carbonic anhydrase likely to be localized in the cytoplasm. Expression of its mRNA is seen in etiolated seedlings and points to a possible nonphotosynthetic role for this isoform.
Computational Description
carbonic anhydrase 2 (CA2); FUNCTIONS IN: carbonate dehydratase activity, zinc ion binding; INVOLVED IN: defense response to bacterium, carbon utilization; LOCATED IN: cytosol, chloroplast thylakoid membrane, apoplast, chloroplast, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbonic anhydrase, prokaryotic-like, conserved site (InterPro:IPR015892), Carbonic anhydrase (InterPro:IPR001765); BEST Arabidopsis thaliana protein match is: carbonic anhydrase 1 (TAIR:AT3G01500.2); Has 5023 Blast hits to 5008 proteins in 1512 species: Archae - 36; Bacteria - 3889; Metazoa - 60; Fungi - 203; Plants - 352; Viruses - 0; Other Eukaryotes - 483 (source: NCBI BLink).
Link
InterPro Scan - TAIR