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ET13630

CSHL Arabidopsis genetrap mutant lines

Original: ET13630

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13630

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1827498 [Map]; Strand: c
      • AT2G05100.1 - [+] show detail - photosystem II light harvesting complex gene 2.1
        Distance: -3073; Region: intergenic
      • AT2G05110.1 - [+] show detail - transposable element gene
        Distance: 530; Region: intergenic
    Flanking Genome Sequence: ET13630 - 3-prime edge
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTAATGAAA 
    AGGCTTGTAG AAGCTACAAA GTTCTTAATA CAAACAGATT AATCTTTGAC
    AAAAAAATAA TAGGGACTTT AATCTTTCTT TAATATTTTA CTAGTGAGGG
    TTACAGATTT TAAGTTCTTT TGAAATCAAT TATACAAAGA AAAAAAAATG
    GTCATGTTAG AAGACGAAGA AGAAGAACCT TGCTCGAAAA GAATGCAATC
    ACTTTCCGGA ATTGTATATA TCGGAAAATT ACGCTGACAG AAATGGTCTG
    AGTGGAAACT CTTGCTGGGA ATTAGCGATC ACTTGTCGGA ACCGAGTGAT
    TACGAAAAGT TAATAGGTAA GAGGTTTGTG TATAGAAAAA TTTTATTAGA
    CAAAAGCCCA ACAATCCAAC ATGGCCCATT CAATCTGGGT AAATATATTT
    CCATGGTTTA TTAAGTTTTT ATTTAAAAGT TTCTTTTCAT CATTTTACAT
    ATATAAGACC ATAATTTTCT ATAGCATTTT ACCTTACCAT GGTTTACTAT
    TTATTTTTTT ATTTTTCCTT CTAATAACTT TATTACTTTC AAAAGTTGAT
    ATCGTTGTGT ACAAGAGATG CAAGGAAGAA AGGACATGAA TGATACAATT
    CCCAAAAAGT TGAAGACCCA ACTGCTCGTT TAGCTAGTGT ATCGGCACAT
    CTATTTTGTT GGTGAGGTTT AAAACTGAA

AT2G05100.1

Model type
Protein coding
Short Description
photosystem II light harvesting complex gene 2.1
Curator Summary
Lhcb2.1 protein encoding a subunit of the light harvesting complex II. Member of a gene family with high degree of sequence similarity. Initially LHCB2.3 was considered as a separate gene but appears to be an allele of LHCB2.1.
Computational Description
photosystem II light harvesting complex gene 2.1 (LHCB2.1); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to salt stress, response to blue light, response to red light, response to far red light, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 12 plant structures; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem II light harvesting complex gene 2.2 (TAIR:AT2G05070.1); Has 2375 Blast hits to 2314 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2059; Viruses - 0; Other Eukaryotes - 312 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G05110.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 2.6e-51 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR