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ET13636

CSHL Arabidopsis genetrap mutant lines

Original: ET13636

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13636

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25741283 [Map]; Strand: w
      • AT5G64380.1 - [+] show detail - Inositol monophosphatase family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: ET13636 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAAA 
    AACGGATAAC GAATAGAAGA TGACGAGGAG TAGAAAACCC CACAGTTCAT 
    AGTATCTGAT TACGGTTATT TTTGGAATTG GATTCCGGTT CAATTATAAA 
    CCGGTTCGAT TATAAAAGCA AAGGAGCTGC CTTTTGGCAT CAACATATAT 
    TCAGCTACAA ACAGATTTTC AGTTACCGTT ACATTTACAC AAATGATTGA 
    ACATTGATTA TTGGACTTTT CTTCTTTGAA GATTCACAGA GTGAAATTTT 
    CTTCTTATGT AGAATTCTTG TGGAGCAATG GGTCAGAGAC GACTTGAGGC 
    TTGAAGTCTG GCTTTATGTA CTTTGCCAAA AGATCGGCAT AGACTTCGTA 
    TCTTGCAGTC ATTCTAAATC CCCACTTGTC CTTGTATTGC CGGCAGAGAT 
    TGAGATCCAT GTCCGAGATC AATAAACCAT CTTTGTAACG GGACAAAGAC 
    GGTGTGCAAG AAGCATCTGG TGCAGAAAAA TGCTTTGACC CATAGAAATG 
    CCCGAAATCA

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27123486 [Map]; Strand: c
      • AT1G72080.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -725; Region: promoter
      • AT1G72090.1 - [+] show detail - Methylthiotransferase
        Distance: -81; Region: promoter
    Flanking Genome Sequence: ET13636 - 5-prime edge 
    CTTTCTCCCT GCAGGAGAGG ACAGTGAGAC TTAATGGGCC TGGGTCGGGT 
    CGAATTCATG TTCCATTACA ATGACCCGAT GGAGCTATAA CAGACTAAAG 
    CCCAACTAGT AGTACTCTTC AAGTAAAGCA AAAATAGCTA GCAAATAAAT 
    GTAGTGAAAA AACAATTATA TGAATTTTAA GTTATATTCA ACGAAAATTA 
    TTCATAGCTT TAGTAAAGTA ATTTTATGAT ATATATAGAC AAAATCTATT 
    TTGTATTTTC TTATTGTAAA TTTTAACTGG TCAACACTAC TTGTAAAACA 
    AAAATTGGAA ATAAATTGAT TTCACCAATT TTTCATAACA AATCTGATGA 
    TGATTGAGAT TTTTTTGGTT ATTACAAAAT ATATTTGGAT ATTTACTATT 
    TGCTACCAAA CATATTTTAC AATTATTATT GACTTTTTTC TTATTACAAT 
    TATCATTTAT AAAATCATTA ATTAAAACTT ATTATGAGTT TTCTTTAATT 
    GGACATTTGC CTTCTTTCTT TTTCAATTTT AAAATATATT ACCAAAAGGA 
    GATGAGAAAC TTCCAAACT

AT1G72080.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G72090.1

Model type
Protein coding
Short Description
Methylthiotransferase
Computational Description
Methylthiotransferase; FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, iron-sulfur cluster binding, catalytic activity; INVOLVED IN: metabolic process, RNA modification; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methylthiotransferase (InterPro:IPR005839), Aldolase-type TIM barrel (InterPro:IPR013785), Methylthiotransferase, conserved site (InterPro:IPR020612), Methylthiotransferase, N-terminal (InterPro:IPR013848), Radical SAM (InterPro:IPR007197), Deoxyribonuclease/rho motif-related TRAM (InterPro:IPR002792), Elongator protein 3/MiaB/NifB (InterPro:IPR006638), MiaB-like tRNA modifying enzyme, archaeal-type (InterPro:IPR006466); BEST Arabidopsis thaliana protein match is: Methylthiotransferase (TAIR:AT4G36390.1); Has 15738 Blast hits to 15705 proteins in 2423 species: Archae - 403; Bacteria - 9758; Metazoa - 296; Fungi - 1; Plants - 135; Viruses - 0; Other Eukaryotes - 5145 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G64380.1

Model type
Protein coding
Short Description
Inositol monophosphatase family protein
Computational Description
Inositol monophosphatase family protein; FUNCTIONS IN: phosphoric ester hydrolase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fructose-1,6-bisphosphatase (InterPro:IPR000146); BEST Arabidopsis thaliana protein match is: high cyclic electron flow 1 (TAIR:AT3G54050.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR