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ET13642

CSHL Arabidopsis genetrap mutant lines

Original: ET13642

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13642

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10887954 [Map]; Strand: w
      • AT4G20140.1 - [+] show detail - Leucine-rich repeat transmembrane protein kinase
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET13642 - 5-prime edge
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TATAATGAGA 
    TTGCACTTCA GTGCACAAAA ACTTCTCCCC AAGAGAGACC ATCTTCTAGG
    CAAGCTTGTG ATAGTCTTCT CCATGTCTAC AACAACAGAA CGGCCGGTTA
    TAAGAAGCTG TAAAAAAACT GACACCTGCA AATGTCTTTG GAGACATGAA
    AACTGCCAAC TTTAATTTTT TTCTTCTGAA ATTCTGTTTC TGCTTTGTAT
    AGATGACATG GTTTCTTTCA GTACAAAGAT TGTTTCGAAC TTGATCCATC
    TGCTACAAAA ACACTTATTG TCTTTTGCAT GGACTTGTAA TACAACTTAA
    ACCAAATTTT AAACAGAATG ATTCTGATTC TGATTCTGAA ACTCT

AT4G20140.1

Model type
Protein coding
Short Description
Leucine-rich repeat transmembrane protein kinase
Curator Summary
Encodes GASSHO1 (GSO1), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO1 and a homolog GSO2 (At5g44700) are required for the formation of a normal epidermal surface during embryogenesis.
Computational Description
GASSHO1 (GSO1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, embryo development, epidermis development; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT5G44700.1); Has 301150 Blast hits to 144127 proteins in 5007 species: Archae - 193; Bacteria - 28594; Metazoa - 96322; Fungi - 11667; Plants - 129816; Viruses - 411; Other Eukaryotes - 34147 (source: NCBI BLink).
Link
InterPro Scan - TAIR