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ET13643

CSHL Arabidopsis genetrap mutant lines

Original: ET13643

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13643

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    Not mapped

    Flanking Genome Sequence: ET13643 - 3-prime edge 
    CCGTTTTCAT GCCTAATTTT CCTTATGGGC CAACT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2915379 [Map]; Strand: w
      • AT3G09470.1 - [+] show detail - Major facilitator superfamily protein
        Distance: -866; Region: promoter
      • AT3G09470.2 - [+] show detail - Major facilitator superfamily protein
        Distance: -866; Region: promoter
      • AT3G09480.1 - [+] show detail - Histone superfamily protein
        Distance: -58; Region: promoter
      • AT3G09490.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -180; Region: promoter
    Flanking Genome Sequence: ET13643 - 5-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC ATACCGAGAT ATATATAGAG 
    GTGCTGATAC GAACATGATT GGTTTTTGAT CAATCTCACG GATCGTCTAC 
    GTGGCGTTAT CACGTGCGTT GATACAAGAT AATCTACGGT TGAATTCACG 
    AGAGGAACCG AATTAATCGT GGGCTCATCT AATGGGCCTT GGCCTTTTAC 
    AAGACGGCAT CCTTTTTAAA AAATTTCGTC GATTTCCAAC TTATTTGCTC 
    T

AT3G09470.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); Has 797 Blast hits to 785 proteins in 150 species: Archae - 2; Bacteria - 12; Metazoa - 475; Fungi - 196; Plants - 54; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09470.2

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); Has 810 Blast hits to 800 proteins in 150 species: Archae - 2; Bacteria - 12; Metazoa - 490; Fungi - 196; Plants - 54; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09480.1

Model type
Protein coding
Short Description
Histone superfamily protein
Computational Description
Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G02570.1); Has 3226 Blast hits to 3226 proteins in 338 species: Archae - 0; Bacteria - 0; Metazoa - 2242; Fungi - 198; Plants - 460; Viruses - 0; Other Eukaryotes - 326 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G09490.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: photosynthesis, light reaction; LOCATED IN: chloroplast thylakoid lumen; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G02590.1); Has 963 Blast hits to 845 proteins in 243 species: Archae - 144; Bacteria - 518; Metazoa - 11; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).
Link
InterPro Scan - TAIR