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ET13651

CSHL Arabidopsis genetrap mutant lines

Original: ET13651

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13651

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22073111 [Map]; Strand: w
      • AT1G59960.1 - [+] show detail - NAD(P)-linked oxidoreductase superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT1G59970.1 - [+] show detail - Matrixin family protein
        Distance: -423; Region: promoter
    Flanking Genome Sequence: ET13651 - 3-prime edge
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAACCGAGA 
    GAAACCATTT TCTGAGAGCA CACTTTCGTT GACTTCTCTT TAACCAATGT
    CTTTAACCAC AGTCCCTACG CTCGCAATCA GATCCGGACC ATCCGGTCAT
    CACTCGATGC CGGTTCTTGG TTTTGGAACC GCCGCTTCTC CGCTACCGGA
    ACCAACGATG CTGAAAGAGA CGGTGATTGA GGCTATCAAG CTTGGTTATC
    GCCATTTCGA CACCTCTCCA AGGTACCAAA CGGAGGAGCC GATCGGCGAA
    GCTTTATCGG AGGCGGTTTC ACTCGGCTTA GTTCGATCTC GATCTGAATT
    CTTTGTCACT ACCAAGCTTT GGTGTGCTGA TGCAAATGGT GGTCTCGTCG
    TACCGGCGAT CAAACGGAGT TTGAAGTAAG ATTTTTAGAT TCCTTACTGA
    TTTTCACATG AAATTAGAAT GAACGGTTTC AATCACTGAG AGTAGGTGTC
    ACTATTAGAC TGTATATATG ATAGTCCGGT TTTGTGATTC CGGTTAAGTT
    AAATTGTGAT TGTATATGGT TTAGTTGGTT TAGCGTAGAT GTATACAAAC
    ATACTTGTAA ACACTTTTAC

AT1G59960.1

Model type
Protein coding
Short Description
NAD(P)-linked oxidoreductase superfamily protein
Computational Description
NAD(P)-linked oxidoreductase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: response to salt stress; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase subgroup (InterPro:IPR020471), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT1G59950.1); Has 18939 Blast hits to 18918 proteins in 2314 species: Archae - 331; Bacteria - 12289; Metazoa - 1736; Fungi - 1658; Plants - 1296; Viruses - 0; Other Eukaryotes - 1629 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G59970.1

Model type
Protein coding
Short Description
Matrixin family protein
Computational Description
Matrixin family protein; FUNCTIONS IN: metallopeptidase activity, metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis, metabolic process; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M10, metallopeptidase (InterPro:IPR001818), Peptidoglycan binding-like (InterPro:IPR002477), Peptidase M10A, cysteine switch, zinc binding site (InterPro:IPR021158), Peptidase M10A, matrix metallopeptidase (InterPro:IPR021190), Peptidase, metallopeptidase (InterPro:IPR006026); BEST Arabidopsis thaliana protein match is: Matrixin family protein (TAIR:AT1G24140.1); Has 2665 Blast hits to 2469 proteins in 210 species: Archae - 2; Bacteria - 119; Metazoa - 2216; Fungi - 6; Plants - 186; Viruses - 42; Other Eukaryotes - 94 (source: NCBI BLink).
Link
InterPro Scan - TAIR