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ET13654

CSHL Arabidopsis genetrap mutant lines

Original: ET13654

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13654

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25049028 [Map]; Strand: w
      • AT1G67090.1 - [+] show detail - ribulose bisphosphate carboxylase small chain 1A
        Distance: 0; Region: intron1 (CDS)
      • AT1G67090.2 - [+] show detail - ribulose bisphosphate carboxylase small chain 1A
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: ET13654 - 3-prime edge 
    AGGTCATTTA TATTTCTTCT TTCACTTTTT TATTATTCCA TATGATATTT 
    TTCGGGTCTT TCTTCGAATC TACTAAACTA ATATCATTGG AAAAATCGAG 
    AAAATAGGTG TGGCCTCCCA TTGGAAAGAA GAAGTTTGAG ACTGTCTCTT 
    ACCTAACTGA CCCTTACCGA TTCCGAATTG GCTAAGGAAG TTGACTACCT 
    TATCCGCAAC AAGTGGAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1727649 [Map]; Strand: c
      • AT3G05800.1 - [+] show detail - AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13654 - 5-prime edge 
    TTACCGACCG TTACCGACCG TTACCGACCG TTACCGACCG TTTAAGTGTG 
    GTATCTCCAT CTACGACTAA GATGCCTTAC CGGAGCTTCT TCAGCAGCTT 
    ACCCTTGATC GACGTAGAGC CTCCATCAGC TTTGGAGCGA AAACTCT

AT1G67090.1

Model type
Protein coding
Short Description
ribulose bisphosphate carboxylase small chain 1A
Computational Description
ribulose bisphosphate carboxylase small chain 1A (RBCS1A); FUNCTIONS IN: ribulose-bisphosphate carboxylase activity, copper ion binding; INVOLVED IN: carbon fixation, response to cold, response to blue light, response to red light, response to far red light; LOCATED IN: in 10 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase (small chain) family protein (TAIR:AT5G38430.1); Has 1998 Blast hits to 1975 proteins in 459 species: Archae - 0; Bacteria - 424; Metazoa - 0; Fungi - 0; Plants - 969; Viruses - 0; Other Eukaryotes - 605 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G67090.2

Model type
Protein coding
Short Description
ribulose bisphosphate carboxylase small chain 1A
Computational Description
ribulose bisphosphate carboxylase small chain 1A (RBCS1A); FUNCTIONS IN: ribulose-bisphosphate carboxylase activity, copper ion binding; INVOLVED IN: carbon fixation, response to cold, response to blue light, response to red light, response to far red light; LOCATED IN: in 7 components; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase (small chain) family protein (TAIR:AT5G38430.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G05800.1

Model type
Protein coding
Short Description
AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1
Computational Description
AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 (AIF1); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G09250.1); Has 150 Blast hits to 150 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR