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ET13657

CSHL Arabidopsis genetrap mutant lines

Original: ET13657

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13657

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22073100 [Map]; Strand: w
      • AT1G59960.1 - [+] show detail - NAD(P)-linked oxidoreductase superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT1G59970.1 - [+] show detail - Matrixin family protein
        Distance: -434; Region: promoter
    Flanking Genome Sequence: ET13657 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCTCCC TAACCGAGAG AAATATTTTC 
    TGAGAGCACA CTTTCGTTGA CTTCTCTTTA ACCGATGTCT TTAACCACAG 
    TCCCTACGCT CGCAATCAGA TCCGGACCAT CCGGGCATCA CTCGATGCCG 
    GTTCTTGGGT TTGGAACCGC CGCTTCTCCG CTACCGGAAC CAACGATGCT 
    GAAAGAGACG GTGATTGAGG CTATCAAGCT TGGTTATCGC CAT

AT1G59960.1

Model type
Protein coding
Short Description
NAD(P)-linked oxidoreductase superfamily protein
Computational Description
NAD(P)-linked oxidoreductase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: response to salt stress; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase subgroup (InterPro:IPR020471), Aldo/keto reductase, conserved site (InterPro:IPR018170); BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT1G59950.1); Has 18939 Blast hits to 18918 proteins in 2314 species: Archae - 331; Bacteria - 12289; Metazoa - 1736; Fungi - 1658; Plants - 1296; Viruses - 0; Other Eukaryotes - 1629 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G59970.1

Model type
Protein coding
Short Description
Matrixin family protein
Computational Description
Matrixin family protein; FUNCTIONS IN: metallopeptidase activity, metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis, metabolic process; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M10, metallopeptidase (InterPro:IPR001818), Peptidoglycan binding-like (InterPro:IPR002477), Peptidase M10A, cysteine switch, zinc binding site (InterPro:IPR021158), Peptidase M10A, matrix metallopeptidase (InterPro:IPR021190), Peptidase, metallopeptidase (InterPro:IPR006026); BEST Arabidopsis thaliana protein match is: Matrixin family protein (TAIR:AT1G24140.1); Has 2665 Blast hits to 2469 proteins in 210 species: Archae - 2; Bacteria - 119; Metazoa - 2216; Fungi - 6; Plants - 186; Viruses - 42; Other Eukaryotes - 94 (source: NCBI BLink).
Link
InterPro Scan - TAIR