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ET13661

CSHL Arabidopsis genetrap mutant lines

Original: ET13661

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13661

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19640004 [Map]; Strand: w
      • AT2G48000.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: ET13661 - 3-prime edge 
    TTTCTCCCTG CCACACCTAC ACAACTTGAT TGCTGGGCAC ATCTATGCTT 
    GGGATTGGGA TAAGATGGAA GCAACTTTCC ACTCCATGCA AGAACGGCCT 
    TGTTAAGCCT ACGCTTGCCA CCTATTTGCT GATGC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 23453221 [Map]; Strand: c
      • AT5G57910.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -607; Region: promoter
      • AT5G57920.1 - [+] show detail - early nodulin-like protein 10
        Distance: -378; Region: promoter
    Flanking Genome Sequence: ET13661 - 5-prime edge 
    ACTTTCTCCC TGTGGTGAAG AGAGGCAATC TTTTAACAAT TGACGTAATA 
    AGAAGATTTT TTTTTTTTAT AAAAAAAAAC AAAAACCTTG CCCCAGTTCC 
    CAAAAATCAA AACAGAGTTT TCGGCAAAAC CCGTATTTTT TTAAGAAAAA 
    CCAAAAGGGG GAACCTTTTT TTTTCCCCTC CCCCCCCCGG ATTTTTTTGG 
    GGGGTTTTTT TAAAAAGGCC GAAAAAAAAT TTTCAACCCC CCTTTCCCAG 
    GGGCCCTTAA AAAGGGGCCC CGGTGAAAGG AAAAAAACCT TAATTTTTCC 
    GGCCCCCAGG GGACCCCAGA AACCAAACCG AAGGGGTGGG GTTCCTCAAA 
    AATTTCCTAA CCCAAATAAC CCCTTTAATA AAAAAAAGGG GGCCAGGGGA 
    AAAAAGGGTT TTAAAAAAGG GAGGGGCCTT TAAGGGGTTT CCTTGGCCCC 
    TTACCCAATT TTCTTTGGGG CCCCAGGCCT TACCCCTTTC CCGGAAAAAG 
    TGGGCTCCCA TTTTAAAAAG GGGGGCCCAA CCCCAACACC CCCCCTCCAA 
    AAAAACAAAA TTGGCCCTTT AATTAAAATT TGGGGTCCCT TTTTCCTTTC 
    CTTCCC

AT2G48000.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G30780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G57910.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G30630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G57920.1

Model type
Protein coding
Short Description
early nodulin-like protein 10
Computational Description
early nodulin-like protein 10 (ENODL10); FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: early nodulin-like protein 15 (TAIR:AT4G31840.1); Has 1297 Blast hits to 1250 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR