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ET13665

CSHL Arabidopsis genetrap mutant lines

Original: ET13665

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13665

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28423337 [Map]; Strand: w
      • AT1G75690.1 - [+] show detail - DnaJ/Hsp40 cysteine-rich domain superfamily protein
        Distance: -52; Region: promoter
      • AT1G75700.1 - [+] show detail - HVA22-like protein G
        Distance: -559; Region: promoter
    Flanking Genome Sequence: ET13665 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TAATAAGGAG 
    ATAAATACTA AATATCTTAT TAAGCCACGT GAACAAATCT TAGCCATGGA 
    AACATAATCT AGTGGCTGAG ATTAACCCAA AACTACTGGT TCTTCTTCTT 
    CCTCTCATCC ATCTTCGCGC GCTTAAGCGA TTCTCTGCAA AGCTTCATAC 
    CAAACAAAGA GAAGTCGAAA TGCCAGTTTC AGCTCCATCT CCGCCTCGTC 
    TTCATTCTCC GTTCATTCAC TGTCCCATCA ATTTCACTCC TTCATCTCAC 
    TCGAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 14824835 [Map]; Strand: w
      • AT5G37381.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET13665 - 5-prime edge 
    CACATGAAAG ACTTGGGTAA AGCAAAGTAC TTTCTTGGCA TTGAGATTGC 
    CCGAAATTCA GAAGGCATAT ATCTTTCCTC AAAGAAAAT

AT1G75690.1

Model type
Protein coding
Short Description
DnaJ/Hsp40 cysteine-rich domain superfamily protein
Computational Description
DnaJ/Hsp40 cysteine-rich domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305); Has 581 Blast hits to 563 proteins in 197 species: Archae - 4; Bacteria - 299; Metazoa - 12; Fungi - 21; Plants - 163; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G75700.1

Model type
Protein coding
Short Description
HVA22-like protein G
Computational Description
HVA22-like protein G (HVA22G); CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22-like protein H (ATHVA22H) (TAIR:AT1G19950.1); Has 1473 Blast hits to 1473 proteins in 200 species: Archae - 0; Bacteria - 0; Metazoa - 703; Fungi - 189; Plants - 488; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G37381.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.5e-121 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR