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ET13669

CSHL Arabidopsis genetrap mutant lines

Original: ET13669

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13669

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 14824403 [Map]; Strand: w
      • AT5G37381.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET13669 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGCT 
    GCCACAATAC GTAACAAACT ACGGACCGTC TTCATCATAA CCACATGAGC 
    AAACGTTTCA TTATAGTCCT CACCTTCAAC TTGACGATTG CCACATGCGA 
    CTAATCGAGC TTTATACCGT TCAAGAGAGC CATCGGCATT AAGCTTGATT 
    TTGTACACCC ACTTATTGTT AATCGCTTCA TCTCACTCGA CC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 14824458 [Map]; Strand: w
      • AT5G37381.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: ET13669 - 5-prime edge 
    CTACTTTCTC CCTGGTGGCA GCCGAGAAAT GGGAAGTTCA CCAAATGGAT 
    GTTCACAATG CCTTTCTCCA TGGTGATTTA GAAGAAGAAG TATACATGAA 
    ATTACCGGTT GGTTTTCGTC ATTCAGATCC GAAGAAGGTT TGTCGTCTCC 
    ATAAGTCTCT ATATGGGCTT AAACAAGCCT CGCGGTGTTG GTTCTCTAAG 
    CTCTCTTCGG CGTTGCTAAA GTTTGGATTT GTTCAATCTT ATTCAGACTA 
    CTCTTTATTT ATTCTCTCAC GGGCTGGTGT GGAGCTTCGA GTTCTTATTT 
    ATGTTGATGA CTTGTTGATT TGTGGTAATC ATCCACGTAT GCTTCAGAGT 
    TTTAAAGAGT ACTTGGGAAA ATGTTTTCAC ATGAAAGACT TGGGTAAAGC 
    AAAGTACTTT CTTGGCATTG AGATTGCCCG AAATTCAGAA GGTATATATC 
    TTTCTCAAAG AAAATATTCT CTTCATCTTG TTACTGAAGC TGGACTTCTT 
    GGTTGTAAGC CCGCTGCAAC TCCGATGGAA CAAAATCACA AGTTGGAGAT 
    GAATGAGAGT GAGTTTCTTC CCCGACCTGA AGAATATAGG AGGTTGGTTG 
    GTCGTCTCAT C

AT5G37381.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.5e-121 P-value blast match to GB:BAA78424 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996363|dbj|BAA78424.1| polyprotein (AtRE2) (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR