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ET13673

CSHL Arabidopsis genetrap mutant lines

Original: ET13673

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13673

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28600251 [Map]; Strand: w
      • AT1G76230.1 - [+] show detail - unknown protein; Has 26 Blast hits to 18 proteins in 3 species: Archae - 0; B...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13673 - 3-prime edge 
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    ACTTGTCCAA TTCTTCCCTC AACACTAGTC ATAGCAGTAA GAAGACGATA 
    AGGGAAGATG CAATTTGTGA ATCAAAGAAT AGAAAGAAGT ATAAGCCAAG 
    CAACGAATCT GGATTCAACA CGTTATTTGA TGATGACTGG CTTTTTGGTA 
    ACAATCAGCA AAAGAATGTT GTTACCACTA ATAAAGCCGC TATCAAGAAC 
    GATGCAGAGA TGATCATGAA GTTGCTGCAG AGATCATGTG GAGATTCCTT 
    GTTTCCTAGC TAAGGCCCAG TTTTCGCCTC AATTCGGAAT ATTTGTATTA 
    CCATATACAG TTCCGTTCTA ACTGTCTCTG TATTGTTTTC ATCTCACTCG 
    AC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11577871 [Map]; Strand: w
      • AT1G32170.1 - [+] show detail - xyloglucan endotransglucosylase/hydrolase 30
        Distance: 0; Region: exon4 (3UTR)
      • AT1G32172.1 - [+] show detail - other RNA
        Distance: -635; Region: promoter
    Flanking Genome Sequence: ET13673 - 5-prime edge 
    ACTTTCTCCC TGTTTGTGAG TATAATAAAA TAAAGAGTAA AGATTTGAAA 
    AAGAAAGAAA GAAATAGAGG ATAAATTTGA TAGGCCTTTG GGCTTTCATG 
    AATTGTGAAT GATTTAAGCT CATTCATTAC CTGTAAGTCC ATAAACACAA 
    TTAGGACATG AACATGGTAA ACAAAAAAAG AAAACATCAT GCTAATAAGT 
    CAATAGAGAA TTAGAGATAT ACAACCTCGA GCCCAAGTTA GACTTCTTTA 
    ATAATGGTTA GGCTCAGACC ATCGATTGCT TTAGGCCTGG GTAAATAAAC 
    CTAACCAAAT GGATACTAAA ATTCTATAAC CGAATGAACC GAAACTAAAT 
    TAGTATTGAA CCGAAATATT TATTTATAAA ATTCGAGCTC AGACTCGCAC 
    TTAACATCTA ACCCGAACTT AAACAGAACA AATCGGTTGT GACGTCAGGT 
    AAAAACCAGT CCGCCCGAAA GCTGAGCTCG AAGCTTGCAG ATGACTTATA 
    ATTTAGTCGA TCTAAAAACC TAATTTCAAG ATTAGGAATC CGATCAGGTT 
    AATACATAAT CAACCGACAA AGGTTAACAT AAAACATAAA CTTGTTCTTA 
    AAGACAAAAA CCTTTTAAGA TATAAAAGTG TTTAATATGG ATAAAAGTCT 
    GAAAAATAAG ATATAAAAGT GCTTAATATG GATAAAAGTC CGAAAGATAA 
    GAGTGGTCGA CATAAGTCAA CAGTTGTAGT TCGCCTACCT AACAGATCGT 
    CTGCAGTGTT CCTAGCTCCA GTTCGTCTGT AGTTTTCCTA GCTCACAGTT 
    CGTCTAGTAA ACGGCTTGTC TGCAGCTTTT GTGGCTCGCA ATT

AT1G32170.1

Model type
Protein coding
Short Description
xyloglucan endotransglucosylase/hydrolase 30
Curator Summary
xyloglucan endotransglycosylase-related protein (XTR4)
Computational Description
xyloglucan endotransglucosylase/hydrolase 30 (XTH30); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 29 (TAIR:AT4G18990.1); Has 2058 Blast hits to 2046 proteins in 299 species: Archae - 2; Bacteria - 244; Metazoa - 0; Fungi - 398; Plants - 1344; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G32172.1

Model type
Other RNA
Short Description
other RNA
Link
InterPro Scan - TAIR

AT1G76230.1

Model type
Protein coding
Computational Description
unknown protein; Has 26 Blast hits to 18 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR