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ET13678

CSHL Arabidopsis genetrap mutant lines

Original: ET13678

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13678

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 8417008 [Map]; Strand: c
      • AT4G14680.1 - [+] show detail - Pseudouridine synthase/archaeosine transglycosylase-like family protein
        Distance: -1617; Region: intergenic
      • AT4G14690.1 - [+] show detail - Chlorophyll A-B binding family protein
        Distance: -1275; Region: intergenic
    Flanking Genome Sequence: ET13678 - 3-prime edge
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTTTT 
    CTTTCAGATA TATAAAGAGT TTTCGCAGAG AGCACATATC GATGGTGGTA
    CATCAAATCT GATCATTCAT ATCTAAATAA TTGTTGTTGA GTTTTCTATA
    TGTGTGGAAC GTTAGATTGC TTAAGCTAGA AATTGACACA AGAGTTTGAT
    CACCGAGTTC CTGCCTCCTG GCCTCTAACC GGTACGTCTC GGGTGGGAAC
    TGTCTCCCAC AACTTTTCAC TATCAAGCAA AAAGTATTAC AAGCACTAAT
    AGAGGTTTCT CTTCTCCTTG TTACAAATTT AGAAATTAAC TCACACACAA
    AAGACAATAG AAAAGGAGAC TATACCGACA CGAAGACTAT GCCCATATCT
    TCACAATTGT GCTATTATTT ACCGTTCTAA TCTGAAAAAA AAACAGCGCA
    CGTAGGAGAA TTGGGCACGA AGACATGAAT GGGACACATA AAGGATCAAA
    AGAGTCATCA TGGGTCTGCC ATGATGAAAG TTAAGAAAGT TCCAATACGC
    GCGAAACAAG ATTGAATGCG ACTTCTCTCT ATACCAAAAA CGAATCTCCC
    AAGTCCCAAG TGAATATTGT GAGCCACTAA CTTGTTATTA ACATTTTGAG
    ACAAAAAAAA AATTTGTCCG TGTTTTTGCC AACCCCACTT GGCCGGGACC
    AATCAAAAAA

AT4G14680.1

Model type
Protein coding
Short Description
Pseudouridine synthase/archaeosine transglycosylase-like family protein
Curator Summary
ATP sulfurylase
Computational Description
APS3; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Sulphate adenylyltransferase (InterPro:IPR002650); BEST Arabidopsis thaliana protein match is: ATP sulfurylase 1 (TAIR:AT3G22890.1); Has 2059 Blast hits to 2056 proteins in 649 species: Archae - 98; Bacteria - 865; Metazoa - 242; Fungi - 201; Plants - 189; Viruses - 0; Other Eukaryotes - 464 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G14690.1

Model type
Protein coding
Short Description
Chlorophyll A-B binding family protein
Curator Summary
Encodes an early light-induced protein. ELIPs are thought not to be directly involved in the synthesis and assembly of specific photosynthetic complexes, but rather affect the biogenesis of all chlorophyll-binding complexes. A study (PMID 17553115) has shown that the chlorophyll synthesis pathway was downregulated as a result of constitutive ELIP2 expression, leading to decreased chlorophyll availability for the assembly of pigment-binding proteins for photosynthesis.
Computational Description
EARLY LIGHT-INDUCIBLE PROTEIN 2 (ELIP2); BEST Arabidopsis thaliana protein match is: Chlorophyll A-B binding family protein (TAIR:AT3G22840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR