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ET13693

CSHL Arabidopsis genetrap mutant lines

Original: ET13693

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13693

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 22897418 [Map]; Strand: c
      • AT5G56550.1 - [+] show detail - oxidative stress 3
        Distance: -765; Region: promoter
    Flanking Genome Sequence: ET13693 - 3-prime edge 
    AGGTTGTTAA TTGGACCGAA AATTTTAGTT CCCATCACTA ATAATAACGA 
    CTTTTCCTCA GAATCAATTT AAATAGAAAT ATAACAACGT ATATCCTTAA 
    GTTATTTTAT ATTGACATTT TATGCATAGG AATAATTACG CTATATCCTT 
    AAACCAAGAA TCTTGTCCCT CTTTAAACAA CTTTTTCCCG ACAAATAAAA 
    AGACTGCTTT TTTCTTTGAA ATATGGAGGA TAATATCAAG TTATCAAGTT 
    TCAGACGATT TTTTTAGCAT TGACACACAC TGAATTCAGT TCAAAGTAAA 
    AATCTAGGAT ACTTGAATAT ACAGATTTCA AATTGAAGGG CTTAAGTTAG 
    GAGAATAATA TTCCTATTCA TACATATTTT TCAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 841208 [Map]; Strand: c
      • AT4G01930.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: -448; Region: promoter
      • AT4G01935.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13693 - 5-prime edge 
    AGCCTGAACC GAAAAGCGAG AGACTTACTG GGACGATCCA AGATTTTCCG 
    GTACCGATTT TGCTCTGTCT CTTCTGGCTC AGGCAGAGGA TTTTTCGAAC 
    CGGTGACCGG TTTGGCCCGT TTCGTTTTAG TGGTCTGATG AGAGTAGTTG 
    AAGGAGAAGA TATCGCTAAG ACAGACATCT TCCAATCTCA TCCATACAAA 
    AATTGTGACT GTTTCAAGAA AGGGTATAAA AAAAAAAAAA AAATTGGGGC 
    GGCCCTTATT GAGGGGGGAT TTTTTCACCC GGAACCAAAC CCAAACAAAA 
    CCCAAATTTC CGAAGGGGAA AAAACGAACT TTGGTAAACG GGTTTTATTT 
    TGCTACTTAA AAGGAAAAAA AGGGGGTTCC CCCCCCCTGG AACCCTTTGT 
    TAGGGAGGAA AAAAGGG

AT4G01930.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, embryo, root, flower, seed; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT4G01910.1); Has 2022 Blast hits to 728 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 74; Fungi - 2; Plants - 1926; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01935.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 37 Blast hits to 37 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G56550.1

Model type
Protein coding
Short Description
oxidative stress 3
Curator Summary
Encodes OXIDATIVE STRESS 3 (OXS3)， involved in tolerance to heavy metals and oxidative stress.
Computational Description
OXIDATIVE STRESS 3 (OXS3); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26288.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR