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ET13698

CSHL Arabidopsis genetrap mutant lines

Original: ET13698

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13698

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12886661 [Map]; Strand: c
      • AT4G25100.1 - [+] show detail - Fe superoxide dismutase 1
        Distance: 0; Region: exon1 (5UTR)
      • AT4G25100.2 - [+] show detail - Fe superoxide dismutase 1
        Distance: 0; Region: intron1 (5UTR)
      • AT4G25100.3 - [+] show detail - Fe superoxide dismutase 1
        Distance: 0; Region: intron1 (5UTR)
      • AT4G25100.4 - [+] show detail - Fe superoxide dismutase 1
        Distance: -134; Region: promoter
      • AT4G25100.5 - [+] show detail - Fe superoxide dismutase 1
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: ET13698 - 3-prime edge 
    TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTATTTCTA GGTGAAAGAG 
    TAAGAGACCA GAGAAACTCG AACATGAACT AAGATGTGGA TGAGAGATAG 
    AATCAGTACC TCAAGTTTCA AGGACGAGTG AAGTGAGGAG AGCACACGCC 
    AGTGGAATCT GTGTGTTTTG AGTTTTATGG TTGGATGGCT CTGCTTTTTG 
    GTAATCGAGT TGTGTCGTAC ATGTGGCAGT ACGACGTATC ATTTTGTACT 
    ATCATTATCT TTTTGTAGTA CATTTTTTTT TCTGGCTTCG TGGCTACTAT 
    TGACTCATTG TGATTTGTGT CATCATAAAT TGTCTTGAAA CTTAATAACA 
    TTTGAGTCAT CATAAGTGGA TCAGCCAATC CGGTATTAAA AAAAAAAAAA 
    CCCTCTTTTT TTTCAAACCT AAAAAGCTTT TAAAAATTAA AATTTAT

AT4G25100.1

Model type
Protein coding
Short Description
Fe superoxide dismutase 1
Curator Summary
Fe-superoxide dismutase
Computational Description
Fe superoxide dismutase 1 (FSD1); FUNCTIONS IN: superoxide dismutase activity, copper ion binding; INVOLVED IN: response to oxidative stress, response to cadmium ion, removal of superoxide radicals, response to copper ion, circadian rhythm; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Manganese/iron superoxide dismutase, N-terminal (InterPro:IPR019831), Manganese/iron superoxide dismutase (InterPro:IPR001189), Manganese/iron superoxide dismutase, C-terminal (InterPro:IPR019832), Manganese/iron superoxide dismutase, binding site (InterPro:IPR019833); BEST Arabidopsis thaliana protein match is: Fe superoxide dismutase 2 (TAIR:AT5G51100.1); Has 11570 Blast hits to 11569 proteins in 3359 species: Archae - 194; Bacteria - 8166; Metazoa - 431; Fungi - 784; Plants - 398; Viruses - 1; Other Eukaryotes - 1596 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G25100.2

Model type
Protein coding
Short Description
Fe superoxide dismutase 1
Curator Summary
Fe-superoxide dismutase
Computational Description
Fe superoxide dismutase 1 (FSD1); FUNCTIONS IN: superoxide dismutase activity, copper ion binding; INVOLVED IN: response to oxidative stress, response to cadmium ion, removal of superoxide radicals, response to copper ion, circadian rhythm; LOCATED IN: thylakoid, mitochondrion, plasma membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Manganese/iron superoxide dismutase, N-terminal (InterPro:IPR019831), Manganese/iron superoxide dismutase (InterPro:IPR001189), Manganese/iron superoxide dismutase, C-terminal (InterPro:IPR019832), Manganese/iron superoxide dismutase, binding site (InterPro:IPR019833); BEST Arabidopsis thaliana protein match is: Fe superoxide dismutase 2 (TAIR:AT5G51100.1); Has 11570 Blast hits to 11569 proteins in 3359 species: Archae - 194; Bacteria - 8166; Metazoa - 431; Fungi - 784; Plants - 398; Viruses - 1; Other Eukaryotes - 1596 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G25100.3

Model type
Protein coding
Short Description
Fe superoxide dismutase 1
Curator Summary
Fe-superoxide dismutase
Computational Description
Fe superoxide dismutase 1 (FSD1); FUNCTIONS IN: superoxide dismutase activity, copper ion binding; INVOLVED IN: response to oxidative stress, response to cadmium ion, removal of superoxide radicals, response to copper ion, circadian rhythm; LOCATED IN: thylakoid, mitochondrion, plasma membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Manganese/iron superoxide dismutase, N-terminal (InterPro:IPR019831), Manganese/iron superoxide dismutase (InterPro:IPR001189), Manganese/iron superoxide dismutase, C-terminal (InterPro:IPR019832), Manganese/iron superoxide dismutase, binding site (InterPro:IPR019833); BEST Arabidopsis thaliana protein match is: Fe superoxide dismutase 2 (TAIR:AT5G51100.1); Has 11570 Blast hits to 11569 proteins in 3359 species: Archae - 194; Bacteria - 8166; Metazoa - 431; Fungi - 784; Plants - 398; Viruses - 1; Other Eukaryotes - 1596 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G25100.4

Model type
Protein coding
Short Description
Fe superoxide dismutase 1
Curator Summary
Fe-superoxide dismutase
Computational Description
Fe superoxide dismutase 1 (FSD1); FUNCTIONS IN: superoxide dismutase activity, copper ion binding; INVOLVED IN: response to oxidative stress, response to cadmium ion, removal of superoxide radicals, response to copper ion, circadian rhythm; LOCATED IN: mitochondrion, chloroplast, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Manganese/iron superoxide dismutase, N-terminal (InterPro:IPR019831), Manganese/iron superoxide dismutase (InterPro:IPR001189), Manganese/iron superoxide dismutase, C-terminal (InterPro:IPR019832), Manganese/iron superoxide dismutase, binding site (InterPro:IPR019833); BEST Arabidopsis thaliana protein match is: Fe superoxide dismutase 2 (TAIR:AT5G51100.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G25100.5

Model type
Protein coding
Short Description
Fe superoxide dismutase 1
Curator Summary
Fe-superoxide dismutase
Computational Description
Fe superoxide dismutase 1 (FSD1); CONTAINS InterPro DOMAIN/s: Manganese/iron superoxide dismutase, N-terminal (InterPro:IPR019831), Manganese/iron superoxide dismutase (InterPro:IPR001189), Manganese/iron superoxide dismutase, C-terminal (InterPro:IPR019832), Manganese/iron superoxide dismutase, binding site (InterPro:IPR019833); BEST Arabidopsis thaliana protein match is: Fe superoxide dismutase 2 (TAIR:AT5G51100.1).
Link
InterPro Scan - TAIR