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ET13706

CSHL Arabidopsis genetrap mutant lines

Original: ET13706

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13706

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19003241 [Map]; Strand: w
      • AT5G46830.1 - [+] show detail - NACL-inducible gene 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13706 - 3-prime edge 
    AAACGGTAGA GGATTTTACC GACCGTTACC GACCGTTTTC ATCCCTACCC 
    GTAAATCAGA TCCGAACCGG TAACCAAAAC CGGGTTATAG CTAGCAAACG 
    CCTTACCCGC TAACCCGGAT CCGTTACCAA AACTCCACGT CATGGAAACC 
    AAGAAGAACC ACTCCATATC CGTCACTTCC ACGTCATCGT CATCACTGAC 
    GTCGTCTTCA ACCACCGGAA ACGCTTCGCC GGAGATCATC AAGTTAAGCT 
    CCCGAATAAC ATTACTCCGA CGCTCTTTCT CCTCCGGAGA CGACAGAATC 
    GTCTTCTTCC TCCTCAACCT CCCTCGTGTC TTTTCCTCGT TGCCACCAGT 
    GTAAACTCCG TCGCCCCATT TGAGAACTGC TTCACCGGAA AAGTCATCGT 
    ACGACGGTTT CCAGAAAATG GCGTAACTCC AGGGCTCGTG GGTTCCATTC 
    AACACAGCAT GTAAACGCTT CGGGAGAGTT GTCTCGAGGC TGAGATTCGC 
    CGGAAGTAAT GGTGGCGACG GATCGGAGGT CAAGAGAGCT TCGATCATCA 
    ATAAGTTATC GTCGGTATTA ATCATCGTTG CCGGAGTATT AGAAGTCGTC 
    TCAAGTCTTT GTATTTATAT ATCTAAACTA AACGAGAAAC TATAGAGTAT 
    AGAGTGTACT CTTTATTTTG TTTCACACGA GTGCATGAAA ATATTACATT 
    TTTCTGTGGT TTTCTTTTCA TGAATTTTAA CGACCCATGT GCGATAGCTG 
    ATGTATCACT ATCACCTATC ACCAGGTAAA AGGACCACAT TTTTCTAGGT 
    AACGGGATTG TTTCGTCGTT GAACAAAATG GATTG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19003295 [Map]; Strand: w
      • AT5G46830.1 - [+] show detail - NACL-inducible gene 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13706 - 5-prime edge 
    TCCTACTTTC TCCCTGTTAC GGGTCGGGAT ATGATCGGGC TAAACAGGAG 
    GGGATGTAGG GTTACAGACC ATCTTGTGTA TTCCTTCACA TAACGGAGTG 
    TTGGAGCTTG CATCCACGGA GGAGATCCGA CCAAATTCGG ATCTTTGTAA 
    TAGGATCCGG TTCTTTTTTA ATTTTGAAGG ATCCAAAGAT TTTACCGGAG 
    CCCCGAATTC AAACTCGGAG CTTTTCCCAT TTCAGTTAGA GAGCAGTTGT 
    TCAAGTACTG TAACCGGTAA CCCGAATCCT AGTCCGGTTT ATCTACAGAA 
    CCGGTATAAT TTGAACTTCT CGACGTCATC TTCCTTCTTC CACATTGGCG 
    AGAGCTCCAT GCGGCGATGT ACTGAGTTTT GGCGAGAATG TTAAACAGAG 
    TTTTGAAAAT CGGAACCCTA ATACTTATTC TGATCAGATT CAAAACGTCG 
    TCCCTCACGC GACGGTGATG CTGGAGAAGA AGAAGGGAAA AAAGCGCGGG 
    AGAAAACCGG CGCATGGTAG AGACAAGCCG TTGAACCACG TGGAAGCAGA 
    GAGGATGAGA CGTGAGAAGC TAAACCACAG ATTCTACGCG TTACGAGCGG 
    TTGTACCAAA CGTATCGAAA ATGGACAAAA CGTCGTTGCT CGAAGACGCG 
    GTTTGTTACA TAAACGAGCT GAAATCAAAA GCTGAAAACG TTGAATTGGA 
    GAAACATGCG ATTGAGATTC AG

AT5G46830.1

Model type
Protein coding
Short Description
NACL-inducible gene 1
Curator Summary
Calcium-binding transcription factor involved in salt stress signaling.
Computational Description
NACL-inducible gene 1 (NIG1); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: Basic helix-loop-helix (bHLH) DNA-binding family protein (TAIR:AT1G32640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR