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ET13708

CSHL Arabidopsis genetrap mutant lines

Original: ET13708

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13708

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1133649 [Map]; Strand: c
      • AT1G04240.1 - [+] show detail - AUX/IAA transcriptional regulator family protein
        Distance: -4098; Region: intergenic
      • AT1G04250.1 - [+] show detail - AUX/IAA transcriptional regulator family protein
        Distance: -2609; Region: intergenic
    Flanking Genome Sequence: ET13708 - 3-prime edge
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    AAACTGAAAT ATACTTTTCT ATTACGTTCT TTAAATTCTA TAAGACTGTA
    GAGCAAGTGT TGACGTAAAG TAATTTGTTT GAGTCTCAAA AGAGTTGTGG
    CTTTCACATA CAATCACAAT TTACATTTTA GTCAATGTAA ACTTATTATT
    TGGTTGTGGA TCGTTTCAAT TGCATGCATG CAGCAATGCA TGTCATTTGG
    CTGCATTCCT TAAATGTGAG AAGTATATTC CAACAACTAA TGTAAATGAG
    AAAACTAAAA AAAAAAAAAT TGAAAAGGGC CCCAAATGAC CCCCTTTTGA
    TTTTTTTTTC TGGGGGGAAA AATGTTAAAA GTTGG
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1133566 [Map]; Strand: c
      • AT1G04240.1 - [+] show detail - AUX/IAA transcriptional regulator family protein
        Distance: -4015; Region: intergenic
      • AT1G04250.1 - [+] show detail - AUX/IAA transcriptional regulator family protein
        Distance: -2692; Region: intergenic
    Flanking Genome Sequence: ET13708 - 5-prime edge
    TACTTTCATC CCTGTTTCAG TTCTCCATTC TATTATTTTA CTTTTGTTCG 
    AGTCATATTT AGTTTAAAGT GTGTAATAGT CATATTTTTA TTTTTTTTGA
    TATGTACATT ACTAAGTATA AGTTACATAT TTACATCTAT ATTATGTTGC
    TTAGTTCTAA ACACATAATA TGTATTGAAC TATAACCTTG TTCTCCACCA
    CAAAATGGTT CATTTTTTCT GTACAACTTA AAATAATATA GAAAAGAAAG
    AAATCTTAGT ATATATTGAA GCAATCATTT CCGCTATCAT TTGTTGCATT
    ATTTATTTCT CTGGTGAGTT TGCTT

AT1G04240.1

Model type
Protein coding
Short Description
AUX/IAA transcriptional regulator family protein
Curator Summary
SHY2/IAA3 regulates multiple auxin responses in roots. It is induced rapidly by IAA, and has been shown to be phosphorylated by oat phytochrome A in vitro.
Computational Description
SHORT HYPOCOTYL 2 (SHY2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus, response to cyclopentenone, response to brassinosteroid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: AUX/IAA transcriptional regulator family protein (TAIR:AT5G43700.1); Has 1823 Blast hits to 1821 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1822; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G04250.1

Model type
Protein coding
Short Description
AUX/IAA transcriptional regulator family protein
Curator Summary
Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components.
Computational Description
AUXIN RESISTANT 3 (AXR3); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 14 (TAIR:AT4G14550.1); Has 1763 Blast hits to 1762 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1762; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR