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ET13717

CSHL Arabidopsis genetrap mutant lines

Original: ET13717

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13717

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3374668 [Map]; Strand: w
      • AT5G10690.1 - [+] show detail - pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing pro...
        Distance: 0; Region: intron10 (CDS)
    Flanking Genome Sequence: ET13717 - 3-prime edge 
    TGAAACGGTA GAGGATTTTA CCGACCGTTA CCGACCGTTT TCATCCCTAG 
    GGATCAGGGT GCTTCAAGGT GAGCGTGAAA TGGCAACAGA CAACAAGCTC 
    TTGGGAGAAT TTGATCTAGT TGGCATTCCA CCATCTCCAA GAGGAGTCCC 
    TCAGATCGAA GTGACATTTG ACATTGATGC CAATGGCATT GTCACTGTTT 
    CCGCCAAGGA CAAGACGACT GGTAAAGTAC AACAGATCAC AATCCGATCC 
    TCTGAGTGTT GCGCCTTCCA AGACGAGCAC CATCAATTCC AAATGAGTTG 
    CTACTGATAC AGATTTAGTT CTTTCAATAT ATTCACTTTT GTCAGAAAGA 
    AAATGAACAA GAAACAAAAC CTTGTTCCCT AACCTTGTTC TTCTTCGAGT 
    TCTCTTGCAG CCTATGCTGT TGGAGATTCC TTCTTCCCTT GCACCCCTTC 
    CTTCTTTGTT CCTTCCTCTG GTAATTCTTC TATTTGAGCC TTTGTTTCGG 
    CTGTTTCTTC TTTCACTCTG CTGCTTTCGC TCTCTTCCTC TTTAACTTCT 
    GCTTCTTCCT GTTCCTCTTG TTTACTTTTT TCGAAATTCA CAGCTTCATT 
    CTTTCCTGTA GTAGTAGCAA CTGTCTCGCT ATTTTCCTCA TCATCAACTT 
    TCTTGCTATC AAACTCCTCA TAGATCTCAA TCTTCTTGCT ATCGACCAAC 
    ACTTCTCGTC TCTTCTGCCT AAACCCGCGG AACAAATCAC TCGTCTCATC 
    CAAAACCGAA ACATACTCAG GCTGGTGGCT CTCAAACTTA TACTCCTCAA 
    TGATCTTCAA CTCTTTTGCC TCAGC

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2981194 [Map]; Strand: c
      • AT5G09610.1 - [+] show detail - pumilio 21
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: ET13717 - 5-prime edge 
    TGATTATCGG CTGCAGTTGA GAACACCTTC AAGAGAATGA AACGAGACAA 
    TCAACATTTT AGTAAAAACT TGACAAAAAC AATGGTAGCT TTGGATGGCT 
    CATAAATTAG TATATATCAC AGGAATGTGC TTTCATGACC CCTGTTAAAG 
    AAGAACCAGA GAGATCTCGA GCGTACAAAG AGAATCGAAG AGATTGTGAT 
    TGCAAAAGTG TTACTTATAT AGAGAAGAGG AGATTCTGTG TTCGTAGTTG 
    GAATAGGAAT CGCAGGAGTT ATAGAGATAA GAGCTCCGGT CCCAAGTCAT 
    TTTCGATTTG GAGGACTCGC ATAGAGTTTT AAATTTTTTA ATTTTTTTAA 
    CAAACGCAAA AATTAGCCTG ATTAAAGTTA TTGATAGAAA TTGCATTAAA 
    AATTAAAACA TCATCACTGC AAATAAAACA ATATTTTAAC TCATCTTTTC 
    CTGAAATTGA AGTTGACAAA TTTCATGAAG AAAACTTGTA GCAAAAAGAG 
    TAACGTAGCA ACAGAACTTT GGTAAACATT TATTACATCA TTCAAAAAAG 
    GTCTGAGAAC AAAGAAAAGC AACAAACATA CCCCCAAAAA AGCCTCGAAT 
    CCAAAGAAAC AGGTGCTAAA TCTTTACCTT TTCAAGACAG AGTTTAACAA 
    ATGTTTTCTT GTCTCCTTAT TAATCATCTC AAAGAAACTC TTACTGGAGA 
    CTTTG

AT5G09610.1

Model type
Protein coding
Short Description
pumilio 21
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 21 (PUM21); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 16 (TAIR:AT5G59280.1); Has 4825 Blast hits to 2764 proteins in 231 species: Archae - 2; Bacteria - 5; Metazoa - 477; Fungi - 433; Plants - 446; Viruses - 4; Other Eukaryotes - 3458 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G10690.1

Model type
Protein coding
Short Description
pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein
Computational Description
pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G12775.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR