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ET13721

CSHL Arabidopsis genetrap mutant lines

Original: ET13721

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13721

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10204796 [Map]; Strand: c
      • AT2G23980.1 - [+] show detail - cyclic nucleotide-gated channel 6
        Distance: -329; Region: promoter
      • AT2G23985.1 - [+] show detail - unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bac...
        Distance: -196; Region: promoter
      • AT2G23985.2 - [+] show detail - unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Arch...
        Distance: -196; Region: promoter
    Flanking Genome Sequence: ET13721 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAGCTATAA 
    GAGAGCATCT CCAACGCAGG GTTTTAATGC AATATTTGTT GGGCTCTCTT 
    GATAATTTGA ATTACAAATA ATTACAAATA AATCAAAATT GAATTAAACT 
    GAGAGAAGAC GGGTAGGAAA GTCCGTCGGG TCATTAAATC TAAACTAGAT 
    AGAGTTATGG CGAATGAAGA ATGGCATACT ATTTTTTCCC ACACCAATGT 
    GGAGTACCTA AAATTATGGG G

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10204738 [Map]; Strand: c
      • AT2G23980.1 - [+] show detail - cyclic nucleotide-gated channel 6
        Distance: -271; Region: promoter
      • AT2G23985.1 - [+] show detail - unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bac...
        Distance: -254; Region: promoter
      • AT2G23985.2 - [+] show detail - unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Arch...
        Distance: -254; Region: promoter
    Flanking Genome Sequence: ET13721 - 5-prime edge 
    CCTACTTTAT CCCTGCTTAT AGCATCTATT ATCAACCATA GTATCACATT 
    TTTTTTGTGG ACAAAGAACC ATAATATAAC ATTTTGATAC GTAAACAAAT 
    TATTTAATTC CATGCATGGC GTGGGACAAC CTAAGTATAC ATATAATTTA 
    TTTTTTTAAG TAGTAGATAT TGAATCAAAG TAAAATATAG AAGCAGTGAA 
    AATTATAGTT TGTAGTATAT CCCTATATTT CTTACATGTA ATGATTTAAA 
    AGGAGACAGC AGAGGAAGCG GGTGGGACCC GACTCGGACA GCAAGAAGAA 
    GAAAGTCAAT TTTTTGGACA CAAAGACAGA AGAAGACACC TTCACTTTC

AT2G23980.1

Model type
Protein coding
Short Description
cyclic nucleotide-gated channel 6
Curator Summary
member of Cyclic nucleotide gated channel family
Computational Description
cyclic nucleotide-gated channel 6 (CNGC6); FUNCTIONS IN: calmodulin binding; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide gated channel 9 (TAIR:AT4G30560.1); Has 3569 Blast hits to 3382 proteins in 249 species: Archae - 0; Bacteria - 42; Metazoa - 1579; Fungi - 32; Plants - 1028; Viruses - 0; Other Eukaryotes - 888 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G23985.1

Model type
Protein coding
Computational Description
unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G23985.2

Model type
Protein coding
Computational Description
unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR