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ET13730

CSHL Arabidopsis genetrap mutant lines

Original: ET13730

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: ET13730

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11212920 [Map]; Strand: w
      • AT4G20960.1 - [+] show detail - Cytidine/deoxycytidylate deaminase family protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: ET13730 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAGACATAG 
    AATACCTGCA AAGATTTTCA AAACTTAAAA ACAATCTATT GACTCGGATT 
    TGTCTCCACT CAAGAGAAGC AATGAACTTT ACCTGAGGGC GAGAAAAGGC 
    TTCCCTGTTA ACATTCGATG GATGAATCCC TCATTCATCT TCTTGCATAA 
    CTCTTCTTCA ACACTCACAG TAACATCGAT TCCAGCATCT TTCAACCGAC 
    TAATACCCGA AGAAAAAACA ATTGGATTCG GATCAACCAT CCCAATAACA 
    ACTCTTCTCA CCTTAGCCTT AATCAATGCT TCTGTACACG GCGGTGTTCT 
    TCCGTAATGA TTACATGGTT CCAAACTAAC ATAAGCAGTA GCATTCTCAG 
    CTAACTCTCC AGCATCTCTA AGAGCAAACA CCTACCATAC CAATGCCAAC 
    AACAACAATT CCACAAGCAA GACTTAAAGT TTGCTCATTT TCAGTAACCC 
    AACAAAGAAA GATTGAATTT TTGTTACCTC AGCATGAGGC TGACCAGCTT 
    TGGGATGAAA CCCTTGGCCA ACAATGTCAC CATCTTTGAC AATGACACAA 
    CCTACCATAG GATTAGGACT TGTACACCCA ATTGCTCTTT TTGCTAGCTC 
    CACACACTTT CTCATATAAA ACGAATCATC GACTTC

AT4G20960.1

Model type
Protein coding
Short Description
Cytidine/deoxycytidylate deaminase family protein
Curator Summary
encodes diaminohydroxyphosphoribosylaminopyrimidine deaminase catalyzing the second step in the riboflavin biosynthesis
Computational Description
Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, zinc ion binding, diaminohydroxyphosphoribosylaminopyrimidine deaminase activity; INVOLVED IN: riboflavin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Riboflavin biosynthesis protein RibD (InterPro:IPR004794); BEST Arabidopsis thaliana protein match is: cytidine/deoxycytidylate deaminase family protein (TAIR:AT3G47390.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR